Pairwise Alignments

Query, 188 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Variovorax sp. SCN45

Subject, 200 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 46.2 bits (108), Expect = 4e-10
 Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 23/156 (14%)

Query: 26  VRDEEAALDIVQDSMMKLAQHYGDKPANE---LPMLFQRILSNCTLDWFRRQKTRRALFS 82
           V+D   A D++QD+ +K          NE         RI  N  +D FR++K  R+   
Sbjct: 43  VKDSYTAEDLMQDAFIKAIHTMKGGRYNEEGKFSSWICRIAHNLAIDHFRKEK--RSPVI 100

Query: 83  NLSDFDSVDDDGDFDLLENFVSPTDSRES-ESAEDTTRRAQVFHEIEEQIAALPGRQREA 141
            L D  +V +   F          DS ES +  EDT  R      + E I  LP  QRE 
Sbjct: 101 TLEDGSNVFNTMSFS--------EDSAESLQIKEDTHAR------LRELIQTLPQSQREV 146

Query: 142 FLMRYWEEMDVAETAAAMGCSEGSVKTHCSRAVHAL 177
            +MR++ +M   E A A G    S+ T   R  +AL
Sbjct: 147 LMMRHYADMSFQEIADATGV---SINTALGRMRYAL 179