Pairwise Alignments

Query, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 220 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  147 bits (371), Expect = 2e-40
 Identities = 83/216 (38%), Positives = 128/216 (59%)

Query: 1   MAYQFQFDALAPYTGQLVEGLLHTLGYAASSIVLGMAIGVAGSLALVYGGKPLRGVTRVY 60
           M YQ  F A+      L+ GL   L  A  SI +G  IG+  + A++   + LR    VY
Sbjct: 1   MNYQLNFAAVWRDFPSLLAGLGLGLELALLSIAIGCVIGLMMAFAMLSKHRALRVFASVY 60

Query: 61  VEFFRNTPALVQLFLIYFGLPNLGIRLEAPVAGVISLALYCGAYMVEVFRSGLMSVPRGL 120
           V   RNTP LV + LIYF LPNLGIRL+   + +I+L+LY GAY+ EVFR+GL+++P+GL
Sbjct: 61  VTVVRNTPILVLILLIYFALPNLGIRLDKIPSFIITLSLYAGAYLTEVFRAGLLNIPKGL 120

Query: 121 SEAGAALGLRPRQVLVHVLFVPALRNVFPSLASQMVLTLIGTSLISQIGVEDIFHAGSFI 180
            EAG A+GL   ++  ++     LRNV P+L++  +     TSL + I V ++ +    I
Sbjct: 121 REAGLAIGLGEWRIRAYITVPVMLRNVLPALSNNFISLFKDTSLAAAIAVPELTYYARKI 180

Query: 181 DSRTFRSFEVYLVICAMYFVAVQALRVILGFVQRRL 216
           +  ++R  E +LV  A+Y  A   + ++L ++++RL
Sbjct: 181 NVESYRVIETWLVTTALYVAACYLIAMLLRYLEQRL 216