Pairwise Alignments

Query, 328 a.a., Membrane-fusion protein from Variovorax sp. SCN45

Subject, 343 a.a., predicted membrane fusion protein of efflux pump (NCBI) from Escherichia coli BW25113

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 79/289 (27%), Positives = 119/289 (41%), Gaps = 9/289 (3%)

Query: 4   AKTRKLIAILVALLVLALLVWGFWRASQPAPEVFQGQMEARETDVAGKVTARVAEVAVKE 63
           A   K  A+LV  L L  LV+  WR    AP        A   DV  +V+ R+ E+AV +
Sbjct: 8   APRSKFPALLVVALALVALVFVIWRVDS-APSTNDAYASADTIDVVPEVSGRIVELAVTD 66

Query: 64  GDRIQAGAVLVRMDSPEVRAKLAQATAAEQAAQAVAEKAQNGARPQE--VEMARMQWQRA 121
              ++ G +L R+D     A LA+A A+  A        Q     Q+   +      ++A
Sbjct: 67  NQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVNATVEKA 126

Query: 122 ETAAQLAQTSFRRVDGLAREGLVADQKRDEAEANWKASRDAAIAAKAQYDMARTGARPED 181
             AA+ A  + RR + L +EG V+ +  D A    +A+     A   Q   A +     D
Sbjct: 127 RAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAASAVSGVD 186

Query: 182 KAAASAQARQVAGVVAEAKAAKAETELRSPVGGEVAKVLAKVGELSPQGVAVVTVVDLND 241
             A  AQ   V   +A  K       +R+P  G V  +   VG+ +     + T++D   
Sbjct: 187 --ALVAQRAAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFASAMRPIFTLIDTRH 244

Query: 242 QWVVLNVREDRLSRFALGNEFDARLPALPEGKRTARFKV--YYSAVLPD 288
            +V+ N RE  L     G     RL  + +  +T   KV      VLPD
Sbjct: 245 WYVIANFRETDLKNIRSGTPATIRL--MSDSGKTFEGKVDSIGYGVLPD 291