Pairwise Alignments

Query, 394 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

Subject, 370 a.a., putative translation related protein from Pseudomonas putida KT2440

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 80/338 (23%), Positives = 139/338 (41%), Gaps = 25/338 (7%)

Query: 53  IGVLDQDHSSLSRQLVRFL---DATPGLRVVQQYSDEGEMARALTSGAVDAAVQLPRDLS 109
           + V+D+DHS LSR+L   L   +  P + +  Q  D+     A+ SG     + +P +  
Sbjct: 52  VAVVDEDHSLLSRKLSEALQPPEFQPAVPLPPQRLDQ-----AMDSGQYTFVINVPVNFQ 106

Query: 110 RDVKQGRVGQVVLLHNAQLGTHSSLIQRDVRTAVATVSGGVELAVRNKRGESMTAARVSM 169
            D+  GR  ++ +  +A     +++ Q  +           EL   ++RG   +      
Sbjct: 107 SDLLAGRSPELQINVDA-----TAMSQAFMGAGYIGRIFERELLDYSQRGNEQS------ 155

Query: 170 EPIKASMVALFNTSTDYEQFLGAALIPALLHILAMTAGAWAVGRELRDRSIGAWLGAAPR 229
            P+  +  ALFN + +   FL    I   + ILA+     A+ RE    ++   L     
Sbjct: 156 -PVLINPKALFNPNLEGGWFLAVIQIVNNITILAIILTGTALLREREHGTLDHLLVLPLT 214

Query: 230 WHEALAALAGKLALPFLSLSAVAIAAMVWITAGRGWHPVGSLGWTLFALVVFLALSIALG 289
             E + A  G  AL  +  + +++  +V      G    GS+G  L    ++L  S +LG
Sbjct: 215 ALEIMLAKIGSNALVVVICTWISLVVVV--KGALGVPLSGSMGLFLAVTALYLFASTSLG 272

Query: 290 AFASSLTRSLRTALSATGFITAPAFAFGGVGFPLVAMPFFARMWANLLPYTHYIRVQMEQ 349
            F ++L RS          +  P     G   PL +MP + +      P TH++ +    
Sbjct: 273 IFLATLARSTPQFGLLAIPVIIPMLLLSGGSTPLDSMPQWLQWVMQGSPSTHFVSLSAAI 332

Query: 350 LQMGAPVLYSVATPLWMVLGTAVLLAASAAALVRAARA 387
           L   A   ++V  P  + L T + L   + AL R  R+
Sbjct: 333 LFRDAG--WAVVWPDILAL-TLIGLVFFSVALARFRRS 367