Pairwise Alignments

Query, 258 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 261 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  173 bits (439), Expect = 3e-48
 Identities = 100/253 (39%), Positives = 154/253 (60%), Gaps = 10/253 (3%)

Query: 4   MKTLFAAALVCAAPLLAHADKLADIKAKGAIRIATTIDAAPWGFTDAAGKPTGLDVELAE 63
           +  LFA+ ++  AP  A A+ L DI A+G +++A   D  P+G      KP GLD++ A+
Sbjct: 9   LTALFASLMLSQAP--AQANGLDDIVARGTLKVAVPQDFPPFGSVGPDMKPRGLDIDTAK 66

Query: 64  NVAKAMGVKLELQQVTGANRIPYLLSNKVDVVIAALGSSPERAKQVAFSKPYAAVYLGVY 123
            +A  + VKLEL  V   NRIP+L + KVD+VI++LG + ER K + FSK YA  YL V+
Sbjct: 67  LLADQLKVKLELTPVNSTNRIPFLTTGKVDLVISSLGKNAEREKVIDFSKAYAPFYLAVF 126

Query: 124 GGKGTPKFAKVS---DLAGQTVAVPKGSTPDLSLSELAP-GAKLIRLEDTASTISAFLSG 179
           G    P  A +S   DL G+T++V +G+  D+ L+ +AP  A + R ED  STI+A+L+G
Sbjct: 127 G----PPEAAISSTDDLKGKTISVTRGAIEDIELTAVAPKEATIKRFEDNNSTIAAYLAG 182

Query: 180 QAPLFAENNFIAQKVADENPAKGIEMKSLIRISPAYMAVQPSETALLAEMNKIIDAQAAD 239
           Q  L A  N +   +++ +P +   +K  ++ SP Y+ V  +E ALL ++N+I+ A  AD
Sbjct: 183 QVDLIASGNVVMVAISERSPKRVPALKVKLKDSPVYVGVNKNEPALLEKVNQILVAAKAD 242

Query: 240 GSLAALRLKWFKD 252
           GSL    ++W K+
Sbjct: 243 GSLEKNAMQWLKE 255