Pairwise Alignments

Query, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score = 70.1 bits (170), Expect = 6e-16
 Identities = 88/417 (21%), Positives = 162/417 (38%), Gaps = 63/417 (15%)

Query: 392 ERLDARIAHLLIDEFQDTNPLQWQALYGWLSAYTGAQGRAPRVFIVGDPKQSIYRFRRAE 451
           E    R  H+L+DEFQDTN +Q    Y WL     A+G    +  VGD  QSIY +R A+
Sbjct: 211 EHYQRRFRHVLVDEFQDTNAVQ----YAWLRLL--ARG-GDSLMAVGDDDQSIYGWRGAK 263

Query: 452 PQVFIAAKKFVREGLDGELLNCDHTHRNARAVVGLVNSAMLAAQDAGEFDGYRAHTTERK 511
            +      ++  +  D E++  +  +R+   ++   N+  L A ++G   G    T    
Sbjct: 264 IE---NIHQYTADFPDAEMIRLEQNYRSTGGILKAANA--LIANNSGRL-GKELWTD--M 315

Query: 512 DEGELLKLPAIDRDALGAAEAAPADDGMLHWRDSLVTPRVLPEEQLLQKECEQAAQWVAQ 571
            EGE L L A   +                                   E     + +  
Sbjct: 316 GEGEPLTLYAAYNE---------------------------------HDEARYVVETIES 342

Query: 572 RIADGTPPRQIMVLARRRSRLSAMQDALRQRHIPVQQPEKNELHDAPEVQDVVALIDALV 631
            +  G    +I +L R  ++   +++AL +  IP +        +  E+++ +A +  + 
Sbjct: 343 LVKQGNARNEIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIE 402

Query: 632 SPAHDLSLARALKSPVFGIGDDALVQLALRQRERPSFNWFSLIQ-----KSEDLPAELTE 686
              +D +L R +  P  GIG+  +  +    R      W ++ Q       +   A    
Sbjct: 403 GRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALG 462

Query: 687 AGVKL-RKWQRWLMTLPPHDALDAIFNDGDLLAKFGAAVPAPMRQSALANLRGVLTASLD 745
           A ++L       ++ +P H           L+  +         Q+ + NL  +++A+ +
Sbjct: 463 AFIELIEGLAAKVVDMPLHTMTQTTIEQSGLIT-YHQEEKGEKGQARVENLEELVSAARN 521

Query: 746 IDGARFTTPYALV------RSLRAGGVRAPSVAAPDAVQLLTVHGAKGLEADTVLML 796
            +        + +       SL AG  +A      D++QL+T+H AKGLE   V ++
Sbjct: 522 FESTDEDADLSPLSAFLGHASLEAGDTQADE--HEDSIQLMTLHSAKGLEFPYVFLV 576



 Score = 49.3 bits (116), Expect = 1e-09
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 31 VEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRERLDQWL 85
          V A AG+GKT +LV RI   +  E  S   PH IL++TFT KAA EMR+R++Q L
Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVEQAS---PHSILSVTFTNKAAAEMRQRIEQLL 81