Pairwise Alignments

Query, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score = 78.2 bits (191), Expect = 4e-18
 Identities = 147/589 (24%), Positives = 231/589 (39%), Gaps = 88/589 (14%)

Query: 333 GAQAQHAAWLYQQRMTRLTRILIAAFADV-KRAHGWVDMN-DVEQAAQLLLG-------- 382
           G   +H A    Q + +  + L +  A + + A  WV    +VE+  +  +G        
Sbjct: 305 GEPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDMLVRL 364

Query: 383 QSALSGWVQERLDARIAH----LLIDEFQDTNPLQWQALYGWLSA-YTGAQGRAPR-VFI 436
           Q AL+    ERL + I       LIDEFQDT+P+Q    YG     Y  ++ RA   +F+
Sbjct: 365 QHALASEAGERLASLIREQFPVALIDEFQDTDPVQ----YGIFERIYQISENRAETGLFM 420

Query: 437 VGDPKQSIYRFRRAEPQVFIAAKKFVREGLDGELLNCDHTHRNARAVVGLVNSAMLAAQD 496
           +GDPKQ+IY FR A+   ++AA    R    G L + D  +R+++A+V  VN   L A+ 
Sbjct: 421 IGDPKQAIYAFRGADIYTYLAA----RRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAE- 475

Query: 497 AGEFDGYRAHTTERKDEGELLKLPAIDRDALGAAEAAPADD----GMLHWRDSLVTPRVL 552
                G  A      D+     LP I+  A G  E    D      +  W+  L +   +
Sbjct: 476 -AREAGRGAFLFREADDN---PLPFIEVRAKGRGEQLLIDGEVSAALQCWQ--LESEEPV 529

Query: 553 PEEQLLQKECEQAAQWVAQRIADGTP----------------PRQIMVLARRRSRLSAMQ 596
                 Q+     A  +   +  G                  P  I +L R       ++
Sbjct: 530 SSSVYRQQMAASCASHIVALLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVR 589

Query: 597 DALRQRHI-PVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARALKSPVFGIGDDAL 655
             L  R +  V   +K+ +  A E  D++A + A   P  +  L  AL S   G+   AL
Sbjct: 590 AELAAREVRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAAL 649

Query: 656 VQLALRQRERPSFNWFSLIQKSEDLPAELTEAGVKLRKWQRWLMTLPPHDALDAIFNDGD 715
            +  L Q ER   +W    +   D              WQR    LP    L  + +D  
Sbjct: 650 DR--LNQDERVWESWVMRFRLYRD-------------TWQR-QGVLP---MLRHLLHDFQ 690

Query: 716 LLAKFGAAVPAPMRQSALANLRGVL-TASLDIDGARFTTPYA---LVRSLRAGGVRAPSV 771
           L              + L +L  +L  A+ ++DG +    +    L  S +AG  +   +
Sbjct: 691 LPRTLIRRSDGERVLTNLLHLAELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRL 750

Query: 772 AAPD-AVQLLTVHGAKGLEADTV-LMLDCDAPPPRAQTMGVLVEWKGSDSAPTRFVFLAS 829
            + +  V+++T+H +KGLE   V L   C + P     +   + W   DS     + L  
Sbjct: 751 ESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDGSRLP--LAW--HDSEGNAHLTLTP 806

Query: 830 EKTPPACAAALLEEEQRARHREELNGLYVATTRARERLVLSSVRPARAN 878
           ++         +E     R  E+L  LYVA TRA+    L      R N
Sbjct: 807 DQEQ-------IERADDERLAEDLRLLYVALTRAQHACWLGVADLKRGN 848



 Score = 41.2 bits (95), Expect = 5e-07
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 28  SVAVEACAGAGKTWMLVSRILRALLEEG-----DSACEPHEILAITFTKKAAGEMRERLD 82
           S  +EA AG GKT+ + +  LR +L  G     +    P +IL +TFT  A  E+RER+ 
Sbjct: 16  SQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERIR 75

Query: 83  QWLEDFVERTPEELV-AQLVMRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAWFA 141
             L +       EL  A  ++  +         PR  G     ++        T H W  
Sbjct: 76  ARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAAVSTIHGWCQ 135

Query: 142 GLLR 145
            +LR
Sbjct: 136 RMLR 139