Pairwise Alignments

Query, 252 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 265 a.a., aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate from Pseudomonas putida KT2440

 Score =  100 bits (248), Expect = 4e-26
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 20  VVLLAVWEGAILLFKIPPFVLPSLGSIVQHA--FTDTGRLMAALLATLGEALGGYALGSI 77
           V+LLA+W+ A+    +   +LP+  ++V        +G +   L  +   A  G+ +G  
Sbjct: 20  VLLLAIWQLAVSAGWLSTRILPAPSAVVSAGVELVRSGEIWTHLAISGWRAGLGFVIGGS 79

Query: 78  LGLLLAVLLLLAPPLERVVMPLAVAVNAVPTVAYAPLFLIWFGLGAASKIALVALAVGFT 137
           +GL+L  +  L+   ER++      +  VP +A  PL ++WFG+  ++KI LVAL   F 
Sbjct: 80  IGLVLGFITGLSNWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFP 139

Query: 138 MLVNALHGLKQADAAAVNLMRSFGAGPLKIVWRLRLPVAMPSVVTALRIGVPRSMIVAIV 197
           + +N  HG++  D A V + RS+G     +  ++ LP A+PS++  +R  +    +  IV
Sbjct: 140 IYLNTYHGIRNVDPALVEMARSYGLSGFGLFRQVILPGALPSILVGVRFALGFMWLTLIV 199

Query: 198 GEMLGAYAGLGRMIYESTQ----QVDLLSVWSAVLIASVASMVFYGL-LVWI 244
            E + A AG+G +   + +     V +L++    ++  +A +   GL  VW+
Sbjct: 200 AETISANAGIGYLAMNAREFLQTDVVVLAIVLYAVLGKIADLAARGLERVWL 251