Pairwise Alignments

Query, 335 a.a., Pyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 342 a.a., ABC transporter, periplasmic binding component-related protein from Pseudomonas putida KT2440

 Score = 89.7 bits (221), Expect = 9e-23
 Identities = 80/286 (27%), Positives = 127/286 (44%), Gaps = 13/286 (4%)

Query: 8   ILAAVAASMALLAGMPASAAEKVSVRLKWLAQAQFAGFYVAKAKGFYDQAGLDLTINPGG 67
           +LAA      L     A A +KV +   W AQA+  GFY A A G Y++ GLD++I  GG
Sbjct: 15  LLAAALLPTTLTIAPLAIAGDKVVLLTSWYAQAEQGGFYQALADGLYEKEGLDVSIRMGG 74

Query: 68  PNLNVETLVASGNDTFGLAGGTETVLLAREKGLPLVCIGVTVQNTPFTYVTYKD-SGITK 126
           P +N   L+ S    F +      +L + E+GLP+V +    Q  P   +T+ D SG+  
Sbjct: 75  PQVNGMQLLVSKQADF-IVNYDLQILKSVEQGLPVVAVAAPFQGDPQGLMTHADVSGL-- 131

Query: 127 VKDFAGKKVATWFTGTQYTLYSMLASAGVKQSDLTIVPQSGSMAPFVEKQFDVAAATYYN 186
             D  G K     T  Q T +  L     + +D    P + ++ PF+        A   +
Sbjct: 132 --DALGGKPVLVSTSGQQTWWPWL-KGKYQLADNQARPYTFNLQPFLADPQTTQQAYASS 188

Query: 187 ELNTLKEQGLGDKLTLIKPDDYGVVVQQDTVLVSEKYRNEKPQQVQAFMNATIKGWKYAL 246
           EL    + G+     L    D G      TV+  +    E P++V  F+ A+++GWK  L
Sbjct: 189 ELFQAIKAGVTPNFFLFA--DAGYPPYGSTVVTRQDIIAEHPERVAGFVRASMEGWKRYL 246

Query: 247 QNKKEAIDIVMAAAPSLN---RAHQEAMLDEFEKLVKAGKGTTDGI 289
            +      ++    P++     A   + L ++ +LV  G+  T GI
Sbjct: 247 DDPSAGNALIKRDNPNMTDELLAWGVSTLKQY-RLVTGGEAATQGI 291