Pairwise Alignments

Query, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

Subject, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

 Score =  224 bits (572), Expect = 9e-63
 Identities = 133/345 (38%), Positives = 201/345 (58%), Gaps = 20/345 (5%)

Query: 358 LRGVA--GGASAGGTGTQAGTSGNSNGAAFSAGGVTVQADATTNTLIIAAPEPMYRSLRR 415
           LRG++  G     G G   G       AA    G+ ++ +  TN +++  P+    + R 
Sbjct: 218 LRGLSQEGAVPVEGAGEAEGKDRPVVPAA-GGSGIRLEYEEGTNAVVMVGPDSELAAYRA 276

Query: 416 VIDTLDQRRAQVLVESLIVEVTERDASELGIQWM-AGGGNGRGVRAGTNFGGATLNPNAR 474
           +++ LD RRAQV+VE++I EV++  A ELG+QW+ A    G G+    NFG   +N    
Sbjct: 277 IVEQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGI---VNFGSNGVN--IA 331

Query: 475 NTIEAMPRGLNIGIVD-------GTVNLPGVGEILNLKMLARALQAKDGANILSTPNILT 527
           +   A   G N  + D        T  +   G   N  ML  AL+ K G N+LSTP +LT
Sbjct: 332 SIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLLT 391

Query: 528 LDNEAASIMVGKTVPFVSGQYITNGNSSTNPFQTIQREDIGLKLNIRPQISEGGTVKLDI 587
           LDN  ASI+VG+ VPFV+G    N   + NP+QTI+R+++G+KL I+PQI+   +V+LDI
Sbjct: 392 LDNAEASILVGQEVPFVTGSVTQN---NANPYQTIERKEVGVKLRIKPQINIDNSVRLDI 448

Query: 588 YQEVSTIDTQASDISGIVTNKRALDTSILVDDGQIMVLGGLMEDSVANGTEAVPGLGALP 647
            QEVS+I    S  S ++TNKR + T ++V+D  +++LGGL+ D ++   + VP LG +P
Sbjct: 449 VQEVSSI-ADTSSASDVITNKREIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIP 507

Query: 648 VVGNLFRYDKRQRVKTNLMVFLRPYVIRDANAGRGLTLDRYNFMR 692
            +G LFR D  +  K NLMVF+RP ++RD  +  GL+ D+Y  ++
Sbjct: 508 YLGRLFRSDATRNTKQNLMVFIRPRILRDGPSLAGLSEDKYRTLQ 552



 Score = 97.8 bits (242), Expect = 2e-24
 Identities = 92/331 (27%), Positives = 147/331 (44%), Gaps = 30/331 (9%)

Query: 44  LNFVDADITSVVSALARFLGRNFLFDPRVKGQITLVSEGEVPAATAYGMLSTALRMRGFA 103
           +NFVD ++   + +++R  G  F+ DPRVKG++T+ +     A   Y +    LR +G+A
Sbjct: 35  VNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTVRTVDLHDADAIYDIFLAQLRAQGYA 94

Query: 104 IVDVGEVS-RVVPVADAKLQGGSVNTRNPGG----GLATRTFRLNYENAEAMLPVLKPLI 158
            VD+   S ++VP   A+L+   V      G     +ATR F +    +E +L +LKPLI
Sbjct: 95  TVDLPNGSVKIVPDQAARLEPVPVEAGGQQGEGSDSVATRVFSVRNAASEQVLGILKPLI 154

Query: 159 AAE-NSINAYPANNTLVVTDYIDNLERLARIIESIDTPTSL----DAEVVKLRNGVAVDI 213
                 I  YPA + LVVTD+  NLER+A ++  +D P  +      +V+ LR+  A ++
Sbjct: 155 DPRVGVITPYPAAHQLVVTDWRSNLERIASLLRQLDRPQEVPGSGSTQVIYLRHANAGEV 214

Query: 214 A----GLATE---LLEGSGEKGRRDIVV----------LADPRSNSVVIRSSSPGRTTLA 256
                GL+ E    +EG+GE   +D  V          L      + V+           
Sbjct: 215 VKVLRGLSQEGAVPVEGAGEAEGKDRPVVPAAGGSGIRLEYEEGTNAVVMVGPDSELAAY 274

Query: 257 RELIAKLENAQSDPGNLHVVYLRNAQSVHLAGVLRGLLTGESPDAS--GTGSGSVRAALG 314
           R ++ +L+  ++      ++   +  S    GV + L   E   A     GS  V  A  
Sbjct: 275 RAIVEQLDIRRAQVVVEAIIAEVSDSSAQELGV-QWLFADEKFGAGIVNFGSNGVNIASI 333

Query: 315 AGGMLGGAGAANGTSGGAANASSANRGSTGG 345
           AG    G   A G        ++A  G  GG
Sbjct: 334 AGAAASGDNEALGDLLSTTTGATAGIGHFGG 364