Pairwise Alignments

Query, 450 a.a., General secretion pathway protein E from Variovorax sp. SCN45

Subject, 598 a.a., putative Type II secretion system protein from Pseudomonas putida KT2440

 Score =  320 bits (821), Expect = 6e-92
 Identities = 176/394 (44%), Positives = 244/394 (61%), Gaps = 22/394 (5%)

Query: 75  AQDDAPVIRMINALLAQAARDGASDIHLESFETHSVVRYRVDGTLRDV-VAPRKALHAAL 133
           ++D + V++++N+ L  A +  ASDIHL        ++YR+DG L     A   A    +
Sbjct: 204 SEDQSRVVKLVNSTLYDALKLHASDIHLGMTGQGLTIKYRIDGVLNGAGKASGSAFADQV 263

Query: 134 ISRIKIMSQLDIAEKRLPQDGRITLRVGGRPIDVRVSTVPTAHGERAVLRLLEKD----- 188
           ISRIK+M++LDI EKR+PQDGR  + VG R ID RVS +P+  GE AVLR+L+K      
Sbjct: 264 ISRIKVMAELDIGEKRVPQDGRFKVAVGDRQIDFRVSIMPSIFGEDAVLRVLDKQDLSDR 323

Query: 189 AGRLRLERLGMAPDTLAELTRLVRQPHGIVLVTGPTGSGKTTTLYAALGQLDLSTSNILT 248
              ++L+ LG A +TL  L RL  +P+G++LVTGPTGSGKTTTLYA + +++     I+T
Sbjct: 324 VSGVQLQALGFADETLRALRRLAAEPYGMILVTGPTGSGKTTTLYAMISEINHGVDKIIT 383

Query: 249 VEDPVEYDLPGIGQIPVHGKIGMTFGAALRAALRQDPDNIMIGEIRDLETAQIAVQSSLT 308
           +EDPVEY LPG+ QIPV+ K G+TF   LR+ LR DPD I++GEIRD +TAQIAVQS+LT
Sbjct: 384 IEDPVEYQLPGVLQIPVNEKKGLTFARGLRSILRHDPDKILVGEIRDPDTAQIAVQSALT 443

Query: 309 GHGVLASLHTNDAVSAVTRMTDMGIEPFLLSSSLLGVLAQRLVRCLCPACKAPQTRPDGS 368
           GH V  ++H N+    + R + M ++P+   S+L  VLAQRL+R  CP C  P    D  
Sbjct: 444 GHLVFTTIHANNVFDVIGRFSQMQVDPYSFVSALNAVLAQRLIRLACPHCATP-CEHDDD 502

Query: 369 VVYGP---------------VGCAACGHSGFKGRTGIHELFVVHDDVRRLIHEGGDEQAM 413
            +YG                 GC  C  SG++GR+ I EL  + DD+R++I E      +
Sbjct: 503 TLYGSGLTREGVAGWTFVRVKGCGHCRGSGYRGRSAIAELLHLDDDLRQMIVERRPLAQI 562

Query: 414 RAAAAKRGMRSMREDGQRWVREGITTAEEILRVT 447
           +  A +RG+R +R      VR+G TT EEI RVT
Sbjct: 563 KTLACQRGLRLLRASALDLVRDGRTTLEEINRVT 596