Pairwise Alignments

Query, 384 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family from Variovorax sp. SCN45

Subject, 490 a.a., Probable copper RND efflux membrane fusion protein, CzcB family from Pseudomonas putida KT2440

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 105/361 (29%), Positives = 151/361 (41%), Gaps = 41/361 (11%)

Query: 45  PMLVRQGNRLTVPEGSPLRDRLRVATVGEQASPHDVSLPATVEANPASTVNVLPPLTGKL 104
           PM  +Q      P  SP  D   VA   E+          T  A PA  ++      G  
Sbjct: 48  PMYPQQ--HFPAPGKSPFMDMQLVAKYAEEG---------TDPAEPAVQIS-----QGVQ 91

Query: 105 AELKVRLGDTVKRGQVLATM-TSPDLAQAVSDAQ--KARDALDLAQRALVRARGVNEAGS 161
             L VRL  TV RG++  T+  S  LA    D    +AR A    +R   RA G   A  
Sbjct: 92  QNLGVRLA-TVSRGRLQRTLQVSGVLAFDERDFSVLQARTA-GFVERTYGRATGDVVAKG 149

Query: 162 NAAKDVEAAQSAVAQQ----------TAELRRSETRLRSLGADGS----GAQAGQL---L 204
               DV A + A  Q+             L  +  RL   G  G      A++G++   +
Sbjct: 150 APLADVLAPEWAGLQEEFLALRHLGDVQLLAAARQRLLLAGMPGELVDRVARSGKVQNQV 209

Query: 205 KIVAPISGTVTALNAAAGANLNDATATLMTVANLDSVWVTVNVPENVVGAVAPGQNVTVS 264
            +VAP +G + AL+   G  +    ATL  +  + +VW+   VPE     +  GQ V   
Sbjct: 210 TLVAPSAGVIQALDLRPGMTVTPG-ATLARINGIANVWLEAAVPEAQASGLHEGQAVEAH 268

Query: 265 LAAFPGRRFTGKVGFVSAVLEADTRRAKARIVFANPEGLFKPNMYATAVLGVPQAAQPQ- 323
           L A+PG    GK+  + A  +  +R  + RI   N +G  +P M A   L   + A    
Sbjct: 269 LPAYPGETVQGKLTALLADADLQSRTLRLRIELPNKDGRLRPGMTAQVSLRPGENADDSL 328

Query: 324 -VPASALLMNNDAVSVFVEAEPWTFVRRMVELGREDGDQVRIRSGLNAGERVVVRGGVLL 382
            +PA A++       V V  +   F    V LG+E+G QV I  GL AG++VV  G  L+
Sbjct: 329 LLPAEAVIRTGKRDLVMVAEDQGRFRPIEVVLGQENGGQVAILKGLQAGQKVVASGQFLI 388

Query: 383 N 383
           +
Sbjct: 389 D 389