Pairwise Alignments

Query, 1053 a.a., efflux RND transporter permease subunit from Variovorax sp. OAS795

Subject, 1047 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 1129 bits (2920), Expect = 0.0
 Identities = 587/1041 (56%), Positives = 752/1041 (72%), Gaps = 4/1041 (0%)

Query: 1    MAKFFIDRPIFAWVIALFVLVMGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60
            M+ FFI RP FAWV+ALF+L+ G +A+  LP++QYP VAPP I I   YPGASA+ L DS
Sbjct: 1    MSLFFIKRPNFAWVLALFILLAGLMALPSLPVAQYPDVAPPQITITATYPGASAKVLVDS 60

Query: 61   VLSVIEREMNGSPGLIYMESVAQADGSGTITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120
            V SVIE E+NG+ G++Y ES + + GS  I ++F  GTN DLAQV+VQNR+ +A  RLP 
Sbjct: 61   VTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQNRIKKAEARLPQ 120

Query: 121  AVTQQGVRVDKARNNFLMFVMLSSDNPAF--DPVALGDYTARNIVPELQRVIGVGQAQLF 178
             V  QG++V++A + FL+   L+  + A   D VAL DY ARN+  E+ RV GVG+ Q F
Sbjct: 121  TVLSQGLQVEQASSGFLLIYTLNYKDGAASKDTVALADYAARNVNNEISRVNGVGRLQFF 180

Query: 179  GSENAMRIWIDPAKLQGYALSATDVNNAIRAQNAQVSSGTLGDLPNIPGQAIAATVVVNG 238
             +E AMR+WIDP KL G+ LS  DVN AIRAQN QV +G+ G  P    Q + AT+ V G
Sbjct: 181  AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPASSLQELTATLAVKG 240

Query: 239  QLANVEQFKNIVLRANTNGSTVRLKDVARVELGGQSYATSARLNGVPAVGIGVQPTPNGN 298
             L N E+F  IVLRAN +GS V L DVARV +G Q Y+  +RLNG  AV   VQ +P  N
Sbjct: 241  TLDNPEEFGRIVLRANEDGSAVHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGAN 300

Query: 299  ALQSAKAIRAKMAELERFFPPGVKWDIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLF 358
            A+Q+A+A+  ++ EL   FP GV + IPYD+SRFV ++I +V+ TL+EA+ LVF+VMFLF
Sbjct: 301  AIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLF 360

Query: 359  LQNWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVER 418
            LQN RYT+IPTIVVP+ L GT A +  +GFS+N++TMFGMVL IGI+VDDAIVVVENVER
Sbjct: 361  LQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENVER 420

Query: 419  IMSEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFSAVMVTSI 478
            IM+EEGLSP  AT KAM+Q+SGAI G+T+VL +VF+PLAF  GS G IY+QFS  +  SI
Sbjct: 421  IMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSI 480

Query: 479  AFSAFMALSLTPALCATLLKPVEAGHHHEKRGFFGWFNRGFTRTAKGYESVVARILKRAA 538
             FS F+AL+ TPALCATLLKP+ AGHH EKRGFFG FNR F +    YE V + ++KRA 
Sbjct: 481  LFSGFLALTFTPALCATLLKPIPAGHH-EKRGFFGGFNRLFGKFTHRYERVSSSMIKRAG 539

Query: 539  RYLVIYAVIIGAVVFTYMRLPSSFLPAEDQGNIIVNVQLPPGATQERALSVMQQVEGFIL 598
            RY+++Y  I+G + F Y+RLP SF+P EDQG +I++VQLPPGAT+ R     Q +E ++L
Sbjct: 540  RYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLIIDVQLPPGATRSRTDLTAQLLENYML 599

Query: 599  KQPEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWEERKDPAHSASALAGRAFGALSGIRDA 658
             +    ++  ++GFSFSG G+NAGLAF TLKDW ER     SA+  A       +G+ D 
Sbjct: 600  SREATGAVTMLLGFSFSGMGENAGLAFPTLKDWSERAK-GQSAAEEAVAFNQHFAGLGDG 658

Query: 659  FIYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMAGQSKILAQVRPDGLE 718
             +  ++PPPI  LG + GFS RLQDR+G G EAL+ AR++LLG A  +  +     +GL 
Sbjct: 659  TVMAVTPPPIDGLGTSGGFSLRLQDRAGLGREALLAARDKLLGEANGNPKILYAMMEGLA 718

Query: 719  DAPQLQIDIDRDKANALGVSFDAINATLSTGLGSSYINDFPNRGRLQRVMVQADAPARMQ 778
            +APQL++ IDR+KA ALGVSF++IN  LST  GSS I+DF N GR QRV+VQA+  ARM 
Sbjct: 719  EAPQLRLSIDREKARALGVSFESINNALSTAFGSSVISDFANAGRQQRVVVQAEQSARMT 778

Query: 779  PDDLLRLNASNSQGQPVPLSAFATTRWVKGATQTVRYNGYPAIRISGDAAPGFSTGAAMA 838
            P+ +L+L   NS G  VPL AF +T W +G  Q  RYNGYPA RISGDAAPG STG AMA
Sbjct: 779  PESVLKLYVPNSSGTLVPLGAFVSTHWEQGPVQIARYNGYPAFRISGDAAPGVSTGEAMA 838

Query: 839  EMEKLARQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWTIPLAVI 898
            E+E++  +LPQG G+EWTG S +E++A  QA  L+G A+L VFL L ALYESW IPL V+
Sbjct: 839  EIERIVSKLPQGIGYEWTGLSYQERVASGQAAGLFGLALLVVFLLLVALYESWAIPLVVM 898

Query: 899  LVVPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDLQAQGKGIIES 958
            L+VP+G LG +LA       NDVYF+VGLITIIGL+AKNAILI+EFAK+L  QG  + ++
Sbjct: 899  LIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWDQGHSLRDA 958

Query: 959  ALAAAHLRFRPIVMTSLAFGLGVVPLVLASGAGSASQRAIGTGVLGGMVTGTALAVIFVP 1018
            AL AA LRFRPIVMTSLAF LGVVPL LA+GAG+ASQRAIGTGV+GGM++ T L V+ VP
Sbjct: 959  ALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLSATLLGVVLVP 1018

Query: 1019 VFFVVVRTLFKGSARQHEADK 1039
            +FFV V ++ +      +A++
Sbjct: 1019 IFFVWVLSVLRRKPHAQQANE 1039