Pairwise Alignments

Query, 1053 a.a., efflux RND transporter permease subunit from Variovorax sp. OAS795

Subject, 1049 a.a., Multidrug efflux pump subunit AcrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 1112 bits (2877), Expect = 0.0
 Identities = 569/1046 (54%), Positives = 758/1046 (72%), Gaps = 7/1046 (0%)

Query: 1    MAKFFIDRPIFAWVIALFVLVMGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60
            M  FFIDRPIFAWVIA+ +++ GG+AI +LP++QYP +APPA+ I+ +YPGA A+T++D+
Sbjct: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60

Query: 61   VLSVIEREMNGSPGLIYMESVAQADGSGTITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120
            V  VIE+ MNG   L+YM S + + G+  IT++FE+GT+ D+AQV VQN+L  A P LP 
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120

Query: 121  AVTQQGVRVDKARNNFLMFVMLSSDNPAFDPVALGDYTARNIVPELQRVIGVGQAQLFGS 180
             V QQGV V+K+ ++FLM V + + +       + DY A N+   + R  GVG  QLFGS
Sbjct: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180

Query: 181  ENAMRIWIDPAKLQGYALSATDVNNAIRAQNAQVSSGTLGDLPNIPGQAIAATVVVNGQL 240
            + AMRIW++P +L  + L+  DV  AI+AQNAQV++G LG  P + GQ + A+++   +L
Sbjct: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240

Query: 241  ANVEQFKNIVLRANTNGSTVRLKDVARVELGGQSYATSARLNGVPAVGIGVQPTPNGNAL 300
             + E+F  I+L+ N +GS V L+DVA++ELGG++Y   A  NG PA G+G++     NAL
Sbjct: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300

Query: 301  QSAKAIRAKMAELERFFPPGVKWDIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFLQ 360
             +A AIRA++A++E FFP G+K   PYD++ FV+ISI EVVKTL+EA+ LVF+VM+LFLQ
Sbjct: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360

Query: 361  NWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERIM 420
            N+R T+IPTI VP+ LLGTFA L A GFSIN LTMFGMVL IG++VDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFSAVMVTSIAF 480
            +EEGL P EATRK+M QI GA++G+ +VL +VFVP+AFF GSTG IYRQFS  +V+++A 
Sbjct: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481  SAFMALSLTPALCATLLKPVEAGHHHE-KRGFFGWFNRGFTRTAKGYESVVARILKRAAR 539
            S  +AL LTPALCAT+LKP+  G H E K+GFFGWFNR F ++   Y   V  IL+   R
Sbjct: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540

Query: 540  YLVIYAVIIGAVVFTYMRLPSSFLPAEDQGNIIVNVQLPPGATQERALSVMQQVEGFIL- 598
            YLV+Y +I+  + + ++RLPSSFLP EDQG  +  VQLP GATQER   V+ +V  + L 
Sbjct: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600

Query: 599  -KQPEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWEERKDPAHSASALAGRAFGALSGIRD 657
             ++  V+S+  V GF F+G+GQN G+AFV+LKDW +R    +   A+  RA  A S I+D
Sbjct: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660

Query: 658  AFIYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMAGQ-SKILAQVRPDG 716
            A ++  + P I ELG A+GF F L D++G GHE L  ARNQLL  A +   +L  VRP+G
Sbjct: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720

Query: 717  LEDAPQLQIDIDRDKANALGVSFDAINATLSTGLGSSYINDFPNRGRLQRVMVQADAPAR 776
            LED PQ +IDID++KA ALGVS + IN TL    G SY+NDF +RGR+++V V ++A  R
Sbjct: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780

Query: 777  MQPDDLLRLNASNSQGQPVPLSAFATTRWVKGATQTVRYNGYPAIRISGDAAPGFSTGAA 836
            M PDD+       + GQ VP SAF+++RW  G+ +  RYNG P++ I G AAPG STG A
Sbjct: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840

Query: 837  MAEMEKLARQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWTIPLA 896
            M  ME+LA +LP G G++WTG S +E+L+G+QA  LY  +++ VFLCLAALYESW+IP +
Sbjct: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900

Query: 897  VILVVPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDL-QAQGKGI 955
            V+LVVPLGV+G LLA   R  +NDVYFQVGL+T IGLSAKNAILI+EFAKDL   +GKG+
Sbjct: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960

Query: 956  IESALAAAHLRFRPIVMTSLAFGLGVVPLVLASGAGSASQRAIGTGVLGGMVTGTALAVI 1015
            IE+ L A  +R RPI+MTSLAF LGV+PLV+++GAGS +Q A+GTGV+GGMVT T LA+ 
Sbjct: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020

Query: 1016 FVPVFFVVVRTLFKGSARQHEADKRH 1041
            FVPVFFVVVR  F  S +  + +  H
Sbjct: 1021 FVPVFFVVVRRRF--SRKNEDIEHSH 1044