Pairwise Alignments

Query, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 517 a.a., PAS domain-containing protein from Dickeya dianthicola ME23

 Score =  239 bits (609), Expect = 2e-67
 Identities = 162/527 (30%), Positives = 259/527 (49%), Gaps = 50/527 (9%)

Query: 1   MRNNQPITQHERTFPAEQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPD 60
           MR N P++Q +    A+ +L+S T     ITY N  F+++SGY   EL+   HN +RHPD
Sbjct: 1   MRKNYPVSQRQYPLDAKTKLMSVTTPDSHITYANADFINVSGYEPEELMNQPHNIIRHPD 60

Query: 61  VPPAVFEHMWTTLKSGQPWMGIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTA 120
           +PP+ F  MW TLK+G+ W G+VKNRCKNGDHYWV +  TP+  + +++G+ SVR   TA
Sbjct: 61  MPPSAFADMWNTLKAGKIWTGVVKNRCKNGDHYWVRSSTTPLKRDGKLMGYMSVRTAATA 120

Query: 121 EQVRRAEALYTRLNKGKSAVPGRDKWLPVLQ---DWLPFILVSQLSFLIGVWLNSHWGFA 177
           E++ +AEALY ++N+G          L V      WL       L + I  +     G  
Sbjct: 121 EEISQAEALYAQVNQGTLGNRAFHHGLLVYTGPLKWLSLFKAMPLRWRIRSYFGLLGGLP 180

Query: 178 LAAALSVPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQ-- 235
           LA A ++ L    L W   G    L        + L+ Q+   +R  +  LE ++ S   
Sbjct: 181 LAVAFAL-LPKTALIW---GLFPALMALACLFCELLVQQV---ARPVEQILEQAMRSAAG 233

Query: 236 EARMKTCLTRLQDTA---EHLNSQARQSNSLANASSIGLERQRVETEQVA---------- 282
           +A   T L R  +       +N       +  +  +  L+  ++   ++A          
Sbjct: 234 QANSLTPLNRADEIGMLMRAVNQSGMNFRTFVDDVNSNLQELKIACSEIAQGNHILAECC 293

Query: 283 ----AAINQMAATTQEVASHVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETG 338
                ++ Q AA+ +++ + +   ADA+Q+A++        A +  + +     +V E  
Sbjct: 294 EKTEESLQQTAASVEQLTATIKSNADASQRASQ-------YAQDVNQVVNVGEQAVSEVA 346

Query: 339 LTVTRLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQ 398
            T+  + + S+ I  ++ V+  +A QTN+LA+NAA+EAA AGE G+ FAVVA EVR LAQ
Sbjct: 347 NTMQAITRASERITNIIGVLDNLAFQTNILAINAAVEAAHAGEQGKSFAVVASEVRSLAQ 406

Query: 399 RTAESTGQIHGLIAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITD 458
           R+A S   I  LI              D        G  +V+  ++++  I   V ++T 
Sbjct: 407 RSAASAKDIAALI--------------DNTLSSIRAGDQQVVHTNRSMNNILVKVQDVTH 452

Query: 459 MTTQIATATEEQSAVAEEINRNIATIASLADQTSDEARRSAVLSGEL 505
           +   I+ AT+EQS   ++IN  +  I  L  Q +  A +S   +G L
Sbjct: 453 LMNDISLATQEQSQGLQQINDAVNRIDELTHQNTALASQSNSATGHL 499



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 276 VETEQVAAAINQMAATTQEVASHVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVG 335
           V+ + V   +N ++  TQE +  + +  DA  + +ELT +   +A ++  A   L   + 
Sbjct: 445 VKVQDVTHLMNDISLATQEQSQGLQQINDAVNRIDELTHQNTALASQSNSATGHLQQQIA 504

Query: 336 ETGLTVT 342
                V+
Sbjct: 505 SIAQAVS 511