Pairwise Alignments

Query, 338 a.a., transcriptional regulator, LacI family from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 332 a.a., DNA-binding transcriptional repressor, 5-gluconate-binding (NCBI) from Escherichia coli BW25113

 Score =  180 bits (456), Expect = 5e-50
 Identities = 112/324 (34%), Positives = 178/324 (54%), Gaps = 4/324 (1%)

Query: 11  RPTLNEVAKLAGVSPITASRALRGISTVAPELVEKVRAAAQSLGYVANPAARALASSCSQ 70
           R +L ++A LAGV+ +T SR +R    VA E  E++    + + Y+ N A   L ++ S 
Sbjct: 5   RISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSY 64

Query: 71  TVVVLVPSLSNQLFIETLEAIQDVLRVRGLDVLIGNYHYSPEEEEKLLRNHLVNRPRGIL 130
           T+ +L+PS  NQLF + L  I+ V        LI NY+Y  + EE+ + N L     GI+
Sbjct: 65  TLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGII 124

Query: 131 LTGFDHTAASRQMLETSGIPCVHMMELDTRLGAYCVGFSQQQAGAEAAHHLL-GRGRRRL 189
           L+   HT  + + L ++ IP V +M++        VGF  +QA  +    +L  R R ++
Sbjct: 125 LSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKI 184

Query: 190 AYMAAQLDPRVLQRGEGFRRVLESAGLFDPALQVSTRQASSIGLGGELFARLLDQHPDVD 249
            Y+ ++ D R  QR +G+   +    L    L+++ R  SSI LG +L    L  +PD+D
Sbjct: 185 LYLGSKDDTRDEQRYQGYCDAMMLHNL--SPLRMNPRAISSIHLGMQLMRDALSANPDLD 242

Query: 250 GVFFCNDDLAQGAALEALRLGVAIPERVSLVGFNDLPGSAHMVPRLTSIRTPREEVGQRA 309
           GVF  NDD+A GA L      +A+PE++S+ GF+ L     M+P L S+ TPR ++G+ A
Sbjct: 243 GVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMA 302

Query: 310 AQVLLG-LLDGISQHPQVDLGFEL 332
           AQ+LL  + +    H  VDLG+++
Sbjct: 303 AQMLLSKIKNNDHNHNTVDLGYQI 326