Pairwise Alignments

Query, 329 a.a., L-arabinose ABC transporter membrane protein from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 330 a.a., ribose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  199 bits (507), Expect = 6e-56
 Identities = 108/295 (36%), Positives = 173/295 (58%), Gaps = 3/295 (1%)

Query: 38  VGIFLLCAVFI---DNFMSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSVLACS 94
           VG+ ++  V I   D F++  N+  +   +S   I A  M   + +G  DLSVG V+A S
Sbjct: 36  VGLVVVTLVMILASDTFLTASNLSNIARQVSINAIIAVGMTCVILTGGIDLSVGPVMALS 95

Query: 95  GVIASIVIRDTDSVFLGVSAALALGLVVGLINGIVIAKLRINALITTLATMQIVRGLAYI 154
           G + + ++       L + A + +G+  G+ NG+ +A L +  +I TLATM I RGL  +
Sbjct: 96  GTLTAGLMVAGLPPGLAIGAGMLIGVAFGIGNGLFVAYLHMPPIIVTLATMGIARGLGLM 155

Query: 155 FSNGKAVGVSNEDFFIFGNGQVYGVPVPILITIACFIFFGWLLNYTTYGRNTMAIGGNQE 214
           +++G  +    + F  FG   ++G+ VPILI +  ++    LL +T  GR   AIGGN+E
Sbjct: 156 YTDGYPISGLPDWFAFFGRESLFGIQVPILIMLLTYLVAYVLLQHTRIGRYIYAIGGNEE 215

Query: 215 AALLAGVHVDRTKIIIFAVHGLVGALAGVVLASRMTSGQPMIGQGFELTIISACVLGGVS 274
           A  L+GV   R K++++ + GL  A+AG+VL SR+ SGQP  G  FEL  I+A VLGG S
Sbjct: 216 AVRLSGVRAARFKLLVYGISGLTAAIAGLVLTSRLMSGQPNAGVSFELDAIAAVVLGGAS 275

Query: 275 LSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGTILLLAVIIDRMKRR 329
           ++GG G+I   + G ++L ++ N +N+  +  + Q VI+G I+LLA+ I R + +
Sbjct: 276 IAGGRGVIVGTLLGAMLLGVLNNGLNMLGVSPYVQSVIKGGIILLAIFISRQRHK 330