Pairwise Alignments

Query, 329 a.a., L-arabinose ABC transporter membrane protein from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 328 a.a., arabinose ABC transporter permease AraH from Escherichia coli ECRC100

 Score =  390 bits (1002), Expect = e-113
 Identities = 196/313 (62%), Positives = 244/313 (77%)

Query: 17  APRQGMNLRRFADDWVMLLAAVGIFLLCAVFIDNFMSPLNMRGLGLAISTVGIAACTMLF 76
           AP+   +  R  D + ML+    +F+ CA+F+ NF + +NM+GLGLAIS  G+ AC MLF
Sbjct: 11  APKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPNFATFINMKGLGLAISMSGMVACGMLF 70

Query: 77  CLASGHFDLSVGSVLACSGVIASIVIRDTDSVFLGVSAALALGLVVGLINGIVIAKLRIN 136
           CLASG FDLSV SV+AC+GV  ++VI  T+S+++GV+A L LG++ GL+NG VIAKL+IN
Sbjct: 71  CLASGDFDLSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGILCGLVNGFVIAKLKIN 130

Query: 137 ALITTLATMQIVRGLAYIFSNGKAVGVSNEDFFIFGNGQVYGVPVPILITIACFIFFGWL 196
           ALITTLATMQIVRGLAYI S+GKAVG+ +E FF  G    +G+P PI +T+AC I FG L
Sbjct: 131 ALITTLATMQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLTVACLIIFGLL 190

Query: 197 LNYTTYGRNTMAIGGNQEAALLAGVHVDRTKIIIFAVHGLVGALAGVVLASRMTSGQPMI 256
           LN TT+GRNT+AIGGN+EAA LAGV V RTKIIIF + GLV A+AG++LASRMTSGQPM 
Sbjct: 191 LNKTTFGRNTLAIGGNEEAARLAGVPVARTKIIIFVLSGLVSAIAGIILASRMTSGQPMT 250

Query: 257 GQGFELTIISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGTI 316
             G+EL +ISACVLGGVSL GGIG I +V+AG+LIL  +ENAMNL NI  F QYV+RG I
Sbjct: 251 SIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLI 310

Query: 317 LLLAVIIDRMKRR 329
           LL AVI DR K++
Sbjct: 311 LLAAVIFDRYKQK 323