Pairwise Alignments

Query, 563 a.a., AMP-dependent synthetase and ligase from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 4332 a.a., Linear gramicidin synthase subunit B from Pseudomonas sp. DMC3

 Score = 66.2 bits (160), Expect = 3e-14
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 304  ISSPYLPPGH-VEQTADAALIGEDGRFELLGRLDRIVKLEEKRVSLPLIEQALAAHEWVS 362
            + +P+  PG  + +T D A    DG  E +GR+D  VK+   R+ L  IE  L     V 
Sbjct: 4090 VPNPFGAPGERLYRTGDLARRRTDGVLEYVGRVDHQVKIRGYRIELGEIEARLHEQPEVR 4149

Query: 363  EARLGVVQA-NRASLGALLVLSDAGLLALRNQGRRALTEALRQHLQPHCETIALPRRWRL 421
            +A +GV +  N   L   LV +DA L    N G R   E ++Q L+       +P  W  
Sbjct: 4150 DAAVGVQEGVNGKHLVGYLVAADAAL----NPGERL--ERIKQRLRAELPEYMVPLHWLW 4203

Query: 422  LRQMPLNAQGKLPQADVEAL---------LLAPRSKQPEVL 453
            L QMPLNA GKL +  +  L          LAPR++  + L
Sbjct: 4204 LEQMPLNANGKLDRKALPTLEIGQLQSADYLAPRNELEQTL 4244



 Score = 58.9 bits (141), Expect = 4e-12
 Identities = 122/495 (24%), Positives = 191/495 (38%), Gaps = 95/495 (19%)

Query: 27   TLDHAQFRDQALSVAAGLQARGI---THLAVHLEDAADLAIALFAAWRAD---------- 73
            TL +A+   +A  +A  L+ RG+     + + LE + ++ I L A  +A           
Sbjct: 2210 TLSYAELDARANRLAWALRERGVGPQVRVGLALERSLEMVIGLLAILKAGGAYVPLDPEY 2269

Query: 74   -------------VHVLLPADLQGQTRERWANQVDLWLT--DLPGDTQLSDLRAAPLPAA 118
                         + +LL      Q      + V  W    D PG   L+D  A+ LP  
Sbjct: 2270 PLDRLHYMIEDSRIGLLLSDRAMFQALGDLPSDVARWCLEDDSPG---LADYPASELPFI 2326

Query: 119  ALDLDQCRLSLCTSGSSGEPKLIEKRLRQLANEVCGLEQLWGAELGSACMIGSVATQHIY 178
            +L   Q  L + TSGS+G+PK +     ++A     + + +G       M       H Y
Sbjct: 2327 SLPQHQAYL-IYTSGSTGKPKGVVVSHGEIAMHCQAVIERFG-------MRPDDCELHFY 2378

Query: 179  GLLF-----RLLWPLCA-ARPFVRRQLPF-AEDLQRASREYPSFAWVASPALLKRMGDNL 231
             + F     RLL PL + A+  +R Q  + AE++    R +       +P+   ++   L
Sbjct: 2379 SINFDAATERLLVPLLSGAQVVLRAQGQWDAEEICGLIRTHRINVLGFTPSYGSQLAQFL 2438

Query: 232  -DWHSLAAVRRVFSSGGALPADATQSLQQRL-------GQWPTEIL-------------- 269
               + +  VR + + G AL  +  Q ++             PTE +              
Sbjct: 2439 ATQNEVLPVRMIITGGEALTGEHLQRIRAAFQPAQFFNAYGPTETVVMPLASLAPQVLEE 2498

Query: 270  --GSSETGGIAWR--------------QGGQRWQAFDGVELSQ---DAQGALR---ISSP 307
              GS   G +                 QG        G  L+Q   D  G      ++ P
Sbjct: 2499 GAGSVPIGSVIGARVAYILDADLALVPQGATGELFVGGAGLAQAYHDRPGISAERFVADP 2558

Query: 308  YLPPG-HVEQTADAALIGEDGRFELLGRLDRIVKLEEKRVSLPLIEQALAAHEWVSEARL 366
            +   G  + +T D      DG  E LGR+D  VK+   R+ L  IE  L  H  + EA  
Sbjct: 2559 FAADGGRMYRTGDLVRQRADGLVEYLGRIDHQVKIRGFRIELGEIETRLLDHPSIREA-- 2616

Query: 367  GVVQANRASLGALLVLSDAGLLALRNQGRRA-LTEALRQHLQPHCETIALPRRWRLLRQM 425
             VV A  A  G  LV      +A + + ++A L EAL+ HL+       +P +  LL  M
Sbjct: 2617 -VVLALDAPSGKQLVGYLVTDVAGQGEAQQAELREALKSHLKAQLPDYMVPTQLMLLASM 2675

Query: 426  PLNAQGKLPQADVEA 440
            PL A GKL +  + A
Sbjct: 2676 PLTANGKLDRRALPA 2690



 Score = 46.6 bits (109), Expect = 2e-08
 Identities = 117/479 (24%), Positives = 173/479 (36%), Gaps = 86/479 (17%)

Query: 27   TLDHAQFRDQALSVAAGLQARGI---THLAVHLEDAADLAIALFAAWRAD-VHVLLPADL 82
            +LD A+   QA  +A  L+ +G+     +A+  E +  L I L A  +A   +V L  D 
Sbjct: 1150 SLDFAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLIGLLAIIKAGGAYVPLDPDY 1209

Query: 83   QGQTRERWANQ--VDLWLTD------LPGDTQLS---------DLRAAPLPAAALDLDQC 125
              +          V L LT       LP    +S         D   +  P   L  D  
Sbjct: 1210 PAERLAYMLRDSGVALLLTQTQLLERLPASDGVSVIAMDALHLDKWPSQAPGLHLHGDNL 1269

Query: 126  RLSLCTSGSSGEPKLIEKRLRQLANEVCGLEQLWGAELGSACMIGSVATQHIYGLLFRLL 185
               + TSGS+G+PK +      LA  +  ++  +  +     M  +  +  +   ++   
Sbjct: 1270 AYVIYTSGSTGQPKGVGNTHAALAERLQWMQDTYRLDETDVLMQKAPISFDVS--VWECF 1327

Query: 186  WPLCAARPFVRRQLPFAEDLQRASREYPSFAWVAS---PALLKRMGDNLDWHSLAAVRRV 242
            WPL +    +        D  R ++    +        P LL    D        ++RRV
Sbjct: 1328 WPLISGARLLLAAPGEHRDPHRIAQRVQQYGVTTLHFVPPLLALFIDEPLSAECTSLRRV 1387

Query: 243  FSSGGALPADATQSLQQRLGQWPTEIL----GSSET-----------------------G 275
            FS G ALPA+    +   L Q P   L    G +ET                       G
Sbjct: 1388 FSGGEALPAELRNRV---LTQLPAVQLHNRYGPTETAINVTHWHCSAADGARSPIGRPLG 1444

Query: 276  GIAWR----------QGGQRWQAFDGVELSQDAQG--ALRISSPYLPP-----GHVEQTA 318
             +  R           G        G+ L++   G  AL      + P       + +T 
Sbjct: 1445 NVVCRILDADLNPVPAGVAAELCISGIGLARGYLGRPALTAERFVVDPLGEQGARLYRTG 1504

Query: 319  DAALIGEDGRFELLGRLDRIVKLEEKRVSLPLIEQALAAHEWVSEARLGVVQANRASLGA 378
            D A    DG  E LGRLD+ VKL   RV    I+  L A   V++A   VV     + GA
Sbjct: 1505 DRARWSSDGVIEYLGRLDQQVKLRGFRVEPEEIQARLLAQNGVAQA---VVLVRETAAGA 1561

Query: 379  LLV----LSDAGLLALRNQGRRALTEALRQHLQPHCETIALPRRWRLLRQMPLNAQGKL 433
             L+     SDA   A  +Q    L  AL   L  +     +P +   L  MPL+  GKL
Sbjct: 1562 QLIGYFTASDAQENA--DQQIARLNNALAAELPEY----MVPAQLLRLDAMPLSPSGKL 1614