Pairwise Alignments

Query, 401 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Sphingobium sp. HT1-2

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  112 bits (280), Expect = 2e-29
 Identities = 106/373 (28%), Positives = 164/373 (43%), Gaps = 23/373 (6%)

Query: 42  AGPHHVDAPCVHFPGCGGCELQQIDEPSLADFVSARVTGALAGQAVVPQTVLPAHVSPP- 100
           A P   +APC ++  CGGC LQ +   +        +   L   A V      A +S P 
Sbjct: 84  AAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPE 143

Query: 101 ---RTRRRASLRAARQGKRITIGFAEQGSHVLVDLTMCEILDPRLFALIAPLRTMLLTCL 157
              R R R ++R   + +++ +GF  + S  ++ +  C +L   L +++  L T+L +  
Sbjct: 144 FGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLS 203

Query: 158 PDKRAAHVRMSLTDQGVDLLLEGVKVEGLAADEALGDFARGHALARLTIDQGDGPETRWE 217
             +   HV +        L+     +   A D+A        A A+L + QG+G     +
Sbjct: 204 KPQALGHVELFSGTAEAVLVRHVAPLP--AEDQARLQAFCEQANAQLWL-QGEGEPAPVD 260

Query: 218 PEPATVSFG----GVAVGFPPYSFLQATPDGEAALVKAVQDALP--ATGAVADLFCGLGT 271
           P  A + F      + + + P  F+Q       A+++     L   A   V DLFCGLG 
Sbjct: 261 PA-AQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGN 319

Query: 272 FALAIGAN-RPVYAAEGARDLVLSLKLAGHRAQRRMVADHRDL---FRRPL--TPEELNR 325
           FAL +    R V A EG + +V     A   A+   V + R       +PL  T      
Sbjct: 320 FALPLARQAREVVAVEGVQAMV---DRAAANARNNNVHNARFFQADLSQPLAGTGWAAEG 376

Query: 326 FAAVVIDPPRAGAREQAMQLAQSTVPLIAYVSCNPGSFARDAAHLVTGGYVLDSVMPVGQ 385
           F+AV++DPPR GA E    +A+     + YVSCNP + ARDA  LV  GY L     +  
Sbjct: 377 FSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDM 436

Query: 386 FRWSTHVELVGIF 398
           F  + HVE + +F
Sbjct: 437 FPQTAHVEAMALF 449