Pairwise Alignments

Query, 343 a.a., Psp operon transcriptional activator from Sphingobium sp. HT1-2

Subject, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 3e-58
 Identities = 129/323 (39%), Positives = 182/323 (56%), Gaps = 16/323 (4%)

Query: 6   QFVGQSLAFLDAVELAGRAAELNRPVLVIGERGTGKELIAERLHHLSPRWGEPLIVMNCA 65
           Q  G S A  + ++LA R A  +  +L+ GE GTGKEL+A+ +H+ SPR   P + +NCA
Sbjct: 331 QLNGNSKANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAINCA 390

Query: 66  ALPETLIEAELFGHEQGAFTGATKA-RPGRFEEADGGTLFLDELGTLSMAAQERLLRVIE 124
           A PE+L+E+ELFG+E+GAF+G+ K  +PG FE A  GTLFLDE+G + ++ Q RLLRV++
Sbjct: 391 AFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQ 450

Query: 125 YGEVTRIGSSRPVMVDVRIVAATNEDLPAAADAGRFRPDLLDRLSFEVITLPPLRAREGD 184
             EV R+GS+ P+ +DVRI+AAT++DL +A D G FR DL  RL+   +   PLR R  D
Sbjct: 451 EREVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPED 510

Query: 185 ITVLADHFGRRMAAELNWPQWPGFSAACAAELEGYGWPGNVRELRNVVERAVYRWPEPGR 244
           I ++     +R+  +   P      AA    LE Y WPGNVREL NV+ERA+    E   
Sbjct: 511 IALICRGISQRLLVQGQPPGAADIPAALLPYLERYAWPGNVRELENVIERAMLSARELLE 570

Query: 245 PISAIVFDPFASPWKPRPLMPGTAAVSPESAAPAPVTASVMNGHGDVTDLKSAVDAHEAA 304
                         + R      A V PE     P + +     G+ TDL +     +  
Sbjct: 571 --------------EHRVNEQYLARVLPELCEGPPPSPARKKSSGE-TDLHTIGKVAQLR 615

Query: 305 IVRAALERFRYNQRATAKGLGLT 327
            V+  LE  R N    A+ LG++
Sbjct: 616 HVKETLESCRGNLDEAARRLGIS 638