Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 648 a.a., Cell division-associated, ATP-dependent zinc metalloprotease FtsH from Sphingobium sp. HT1-2

 Score =  204 bits (520), Expect = 9e-57
 Identities = 111/242 (45%), Positives = 157/242 (64%), Gaps = 4/242 (1%)

Query: 481 DIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQA 540
           D+ G+D+A+  L+E VE  LKDP  F RLG +  KG LL G PGTGKTLLA+A+A EA  
Sbjct: 165 DVAGIDEAREELQEIVEF-LKDPSKFARLGGKIPKGALLVGSPGTGKTLLARAIAGEAGV 223

Query: 541 NFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPA-VT 599
            F     SD +  + G    ++  +F +A++ AP ++FIDE+D++   RG GLG      
Sbjct: 224 PFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGLGNGNDER 283

Query: 600 ERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRIL 659
           E+ +N +L EMDG E  + ++++ ATNRP ++DPALLRPGRFD  + VP PD  GR++IL
Sbjct: 284 EQTLNQLLVEMDGFEANEGIIIVAATNRPDVLDPALLRPGRFDRQVVVPRPDIEGREKIL 343

Query: 660 AIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAAL 719
           A+H KK+PLA DV+   +A  T  F+GADL +L   A L+A R+  ++  V M  FEAA 
Sbjct: 344 AVHMKKVPLAPDVNPRTIARGTPGFSGADLANLVNEAALMAARRGKRL--VAMDEFEAAK 401

Query: 720 EE 721
           ++
Sbjct: 402 DK 403



 Score =  200 bits (508), Expect = 2e-55
 Identities = 108/232 (46%), Positives = 148/232 (63%), Gaps = 4/232 (1%)

Query: 200 RRADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLAR 259
           +   VT+DDV G+ E  ++L+E+VE  L+ P  F RLG   PKG +L G PGTGKT LAR
Sbjct: 157 KHGKVTFDDVAGIDEAREELQEIVEF-LKDPSKFARLGGKIPKGALLVGSPGTGKTLLAR 215

Query: 260 AVANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQV 319
           A+A E+   FF I+G + +    G    ++RD+FE+A K AP I+FIDEID++   RG  
Sbjct: 216 AIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAG 275

Query: 320 TG---ETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPD 376
            G   +  ++ + QLL  MDG E    ++++AATNRP+ +D AL RPGRFDR++VV  PD
Sbjct: 276 LGNGNDEREQTLNQLLVEMDGFEANEGIIIVAATNRPDVLDPALLRPGRFDRQVVVPRPD 335

Query: 377 ERGRREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRR 428
             GR +IL +H + +PL   V+   +AR T GF GADLA L  EAA+   RR
Sbjct: 336 IEGREKILAVHMKKVPLAPDVNPRTIARGTPGFSGADLANLVNEAALMAARR 387