Pairwise Alignments

Query, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

Subject, 637 a.a., integral membrane ATP-dependent zinc metallopeptidase from Pseudomonas putida KT2440

 Score =  205 bits (522), Expect = 5e-57
 Identities = 115/268 (42%), Positives = 168/268 (62%), Gaps = 5/268 (1%)

Query: 205 TYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARAVANE 264
           T  DV G  E  +++ E+VE  LR P  F+RLG   P+GV++ GPPGTGKT LA+A+A E
Sbjct: 155 TLADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKTLLAKAIAGE 213

Query: 265 SEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQVTG--- 321
           ++  FF I+G + +    G    ++RD+FE+A K AP I+FIDEID++   RG   G   
Sbjct: 214 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGMGGGH 273

Query: 322 ETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERGRR 381
           +  ++ + QLL  MDG E    ++VIAATNRP+ +D AL RPGRFDR++VVG+PD RGR 
Sbjct: 274 DEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGRE 333

Query: 382 EILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVRRLMPRLNLEEGTIP 441
           +IL +H R +P+G+ V+ A +AR T GF GADLA L  EA++   R     + ++E  + 
Sbjct: 334 QILKVHMRKVPIGENVNPAVIARGTPGFSGADLANLVNEASLFAARSNKRLVEMKEFELA 393

Query: 442 PDVLEDLSVTREDFLSAIKRVQPSAMRE 469
            D +  +   R+  + + K  + +A  E
Sbjct: 394 KDKIM-MGAERKTMVMSEKEKRNTAYHE 420



 Score =  194 bits (492), Expect = 2e-53
 Identities = 114/283 (40%), Positives = 168/283 (59%), Gaps = 14/283 (4%)

Query: 480 ADIGGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQ 539
           AD+ G D+A+  + E VE  L+DP  F+RLG R  +G L+ GPPGTGKTLLAKA+A EA+
Sbjct: 157 ADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKTLLAKAIAGEAK 215

Query: 540 ANFIATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPA-V 598
             F     SD +  + G    ++  +F +A++ AP +IFIDE+D++   RG G+G     
Sbjct: 216 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGMGGGHDE 275

Query: 599 TERVVNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRI 658
            E+ +N +L EMDG E    ++VI ATNRP ++DPALLRPGRFD  + V +PD  GR++I
Sbjct: 276 REQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQI 335

Query: 659 LAIHTKKMPLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAA 718
           L +H +K+P+  +V+   +A  T  F+GADL +L   A L A R + ++  V M  FE A
Sbjct: 336 LKVHMRKVPIGENVNPAVIARGTPGFSGADLANLVNEASLFAARSNKRL--VEMKEFELA 393

Query: 719 LE------ETRASVTPEMERE----YEQIQATLKQSAMQVDPI 751
            +      E +  V  E E+     +E   A + +   + DP+
Sbjct: 394 KDKIMMGAERKTMVMSEKEKRNTAYHEAGHAIVGRLVPEHDPV 436



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 17/72 (23%), Positives = 35/72 (48%)

Query: 311 SIAPKRGQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREI 370
           S   +   V+GET K + +++ +++D        ++I   ++ EA+ EAL +    D + 
Sbjct: 535 SAGSQHASVSGETAKLIDSEVRSIIDQCYATAKQLLIDNRDKLEAMTEALMKYETIDADQ 594

Query: 371 VVGVPDERGRRE 382
           +  +   R  RE
Sbjct: 595 IDDIMAGRTPRE 606