Pairwise Alignments

Query, 590 a.a., ATP-dependent DNA helicase RecQ from Sphingobium sp. HT1-2

Subject, 708 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

 Score =  472 bits (1214), Expect = e-137
 Identities = 265/591 (44%), Positives = 370/591 (62%), Gaps = 15/591 (2%)

Query: 8   LLHDIFGFTTFRGVQEQVVGRVMAGQPTLAIMPTGAGKSLCYQLPAVALDGCCVVVSPLI 67
           +L DIFG+ +FRG Q  ++ RV +G   L +MPTG GKSLC+Q+PA+  +G  VVVSPLI
Sbjct: 8   VLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAVVVSPLI 67

Query: 68  ALMHDQLRAATAVGIRAASLTSVDA--DWRETQDRLRNGELDLLYVAPERASGEGFRNLL 125
           ALM DQ+     +G+ AASL S  +    R+   R++ GE+ +LY+APER         L
Sbjct: 68  ALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQPRMLAFL 127

Query: 126 RSAKVALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADAHTRKDILVQ 185
           +S ++ALFAIDEAHCVS+WGHDFR +Y  L  L + FPDVPR+ALTATAD  TR++I+ +
Sbjct: 128 QSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRTREEIVER 187

Query: 186 LGIPEDGLIISGFDRPNIRYAVHPRDGLTRQ-LADLLAANPGPGVVYAPTRAATEKLAET 244
           L +      +S FDR NI Y + P++   +Q LA L       G+VY  +R   +++A  
Sbjct: 188 LHLQNAERFLSSFDRSNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKKVDEVAAF 247

Query: 245 LGRGGRAVRAYHAGMDPAQRAANQAAFIASEDMVMVATVAFGMGIDKPDVRFVAHAGLPK 304
           L   G     YHAG+    RA +Q  F+  E ++MVAT+AFGMGIDK +VRFVAH  LPK
Sbjct: 248 LCEQGYPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPK 307

Query: 305 SIEGYYQESGRAGRDGEPAVAHLFWGAEDFARARQRIM--ELEPARQQGERARIAALGAL 362
           S+E YYQE+GRAGRDG PA A + +G +D    +Q +   E +   ++ E+ ++ A+ +L
Sbjct: 308 SLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSL 367

Query: 363 VETATCRRAILLRHFGEDPPATCGNCDNCLTPPASVDATETARKYLSAVYRTGQSFGAGH 422
            E   CRR  LL +F ED P  CG+CDNC+    + DATE AR+ LSA+YRTGQ +G GH
Sbjct: 368 CEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTGQRYGVGH 427

Query: 423 IEAVLSGAVTDKIRERGHDKISVYAI----VDGDETTLLRP-VSRALLVRDALETTEHGG 477
           +  VL G   +K+R  GH+K+SVY +     +G+  +L R  V+R L+    ++    GG
Sbjct: 428 LVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLV---DIDIEGFGG 484

Query: 478 LMLGPNARPILRGEE--EVRILVPPRRERKKRNARNGSDANPVGDPLFDALRTCRRELAQ 535
           L L  + RP+L+GE   E+R  + P+   K   ++            ++ALRT RR+LAQ
Sbjct: 485 LRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRRKLAQ 544

Query: 536 DAGVPPYVIFHDSTLREMAEQRPATIHELGMVSGVGQKKLDAYGDAFLAAI 586
           +  VPPYVIF DSTL EM  ++P ++ E+  VSGVG +KL+ YG AFL  +
Sbjct: 545 EHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVL 595