Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 521 a.a., RNA polymerase sigma-54 factor 2 from Xanthobacter sp. DMC5

 Score =  457 bits (1175), Expect = e-133
 Identities = 266/527 (50%), Positives = 347/527 (65%), Gaps = 28/527 (5%)

Query: 1   MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGRE 60
           MA+ P+L+ RQSQSLVMTPQL QAIKLL LSN+E+ A+V  ELE+NPLLE+    +G   
Sbjct: 1   MAMSPKLEFRQSQSLVMTPQLMQAIKLLQLSNMELVAYVEAELERNPLLER--ITEGDTS 58

Query: 61  GSGVDREV---------------EAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFI 105
           GS    EV               E P  +  TG  ++   Q     ++ LD D G   F 
Sbjct: 59  GSDPQPEVRETRGEEMARGGLDGEPPPASDWTGNDNE---QSRAAMETRLDTDLG-NVFP 114

Query: 106 DDGPADRMGAGSGSG----SLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQARSTLSG 161
           DD PADR   G GS     S+    GG   GE  + ++F  A  +L +HL  Q    +S 
Sbjct: 115 DDVPADRGVTGGGSTASSPSMGEWSGGGERGEDYNPEAFLTAETTLADHLEAQLSVAVSD 174

Query: 162 -MDLLIATQLIGQISEAGYLEANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAE 220
               LI   +IG I E GY   +L   A   GVP   VEAVL++I +F+P+GVGAR+LAE
Sbjct: 175 PARRLIGINVIGLIDETGYFTGDLDLLAGQFGVPRAEVEAVLKLIQTFEPSGVGARNLAE 234

Query: 221 CLALQAKEANRYDPCIQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPG 280
           CLA+Q +E +R+DP +Q L+ANL+LLA+     L+R+CGVD EDLADMI E+R  DPKPG
Sbjct: 235 CLAIQLRERDRFDPAMQALVANLELLARHDRNALKRVCGVDNEDLADMIGEIRRLDPKPG 294

Query: 281 LRFASDSATPVTPDLFVSRTREG-WGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWL 339
           L F S    P+ PD++V    +G W +E+NS TLPRVLVN++Y+  +    + +  K++L
Sbjct: 295 LAFGSGVVHPLVPDVYVRPGADGTWLVELNSETLPRVLVNQSYHATVVKHAKSQEEKSFL 354

Query: 340 ADCLASANWLVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHES 399
           ADCL SA+WL ++LDQR +TI+KVASEIVRQQ+ F  +GV +L+PL LR VADAI MHES
Sbjct: 355 ADCLQSASWLTRSLDQRARTILKVASEIVRQQDAFLLHGVRFLRPLNLRTVADAIGMHES 414

Query: 400 TVSRVTSNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILS 459
           TVSRVTSNKY+S PRG+ E+K+FF+S ++A+ G  A SAE+V+  IK LI AE    +LS
Sbjct: 415 TVSRVTSNKYISTPRGVVEMKFFFSSAISASGGGEAHSAESVRHRIKMLIEAEAPKDVLS 474

Query: 460 DDTLVDLLRAKGMDIARRTVAKYRESMGIGSSVQRRRQK-ALKGKAA 505
           DDTLV  L+  G+DIARRTVAKYRE M I SSVQRRR+K A++ +A+
Sbjct: 475 DDTLVQKLKDDGIDIARRTVAKYREGMNIPSSVQRRREKMAMRSEAS 521