Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  291 bits (746), Expect = 3e-83
 Identities = 192/504 (38%), Positives = 278/504 (55%), Gaps = 23/504 (4%)

Query: 5   PRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLE-QGAADDGGREGSG 63
           P L ++  Q L MTPQLQQAI+LL LS L+++  +   LE NP+LE Q   +D       
Sbjct: 3   PSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSDPM 62

Query: 64  VDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSGSLD 123
            D     P  AAE    D+   +    AD+ L+    +E   ++ P D         S  
Sbjct: 63  ADNAENKP--AAEV--QDNSFQESTVSADN-LEDGEWSERIPNELPVDTAWEDIYQTSAS 117

Query: 124 MLGGGSGSGEAVDFDSFANAAPSLQEHLMDQAR-STLSGMDLLIATQLIGQISEAGYLEA 182
            L   S   +  DF +  +A  SLQ HL+ Q   + +S  D LIA  LI  I+  GYLE 
Sbjct: 118 SLP--SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLED 175

Query: 183 NLLQTAHG----LGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPCI-- 236
            L +   G    L + L  VEAVL  I  F+P GVGAR+L ECL LQ ++     P +  
Sbjct: 176 TLEEICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTE 235

Query: 237 -QRLLAN-LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTPD 294
            +RL+ + +DLL      QL R   + E++L  +I  ++  +P+PG +  S     V PD
Sbjct: 236 AKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPD 295

Query: 295 LFVSRTREGWGIEVNSATLPRVLVNRTY--YVELAGGPQDKASKAWLADCLASANWLVKA 352
           + V +  + W +E+N   +PR+ VN  Y  +V  A      A   ++ + L  A W +K+
Sbjct: 296 VIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRA---DTSADNTFMRNQLQEARWFIKS 352

Query: 353 LDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSC 412
           L  R +T++KVA++IV  Q  F  +G   +KPL L  +A+A+ MHEST+SRVT+ KY+  
Sbjct: 353 LQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHT 412

Query: 413 PRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGM 472
           PRG+YELKYFF+S V+ ++G G  S+ A+++ IK L+ AE     LSD  +  LL A+G+
Sbjct: 413 PRGIYELKYFFSSHVSTSEG-GECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGI 471

Query: 473 DIARRTVAKYRESMGIGSSVQRRR 496
            +ARRTVAKYRES+GI  S +R+R
Sbjct: 472 QVARRTVAKYRESLGIAPSSERKR 495