Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 503 a.a., RNA polymerase sigma-54 factor from Magnetospirillum magneticum AMB-1

 Score =  464 bits (1194), Expect = e-135
 Identities = 266/507 (52%), Positives = 348/507 (68%), Gaps = 13/507 (2%)

Query: 1   MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGRE 60
           MA+GPRLDIRQ+QSLVMTPQLQQAIKLL LSN E+ AF+  ELE+NPLLE+   ++G R 
Sbjct: 1   MAIGPRLDIRQTQSLVMTPQLQQAIKLLQLSNFELTAFIDQELERNPLLER---EEGERG 57

Query: 61  GSGVDREVEAPTLAA-ETGASDDLIAQGLGG--ADSPLDVDHGAETFIDDGPADRMGAGS 117
               + +V++  LA  ++  ++  +  G+ G  A+  +DVD+   TF +D  +D +   S
Sbjct: 58  PEPTEPKVDSTDLAVLDSAPAEAPLLDGMNGGSAEDGMDVDYD-NTFNNDSASDAVQDES 116

Query: 118 GS--GSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQARSTLSGM-DLLIATQLIGQI 174
               G++   GGG   GE+ + +       SL++HL  Q    +    D LIA  LI  +
Sbjct: 117 LGQWGNVGGGGGGFDDGES-NLEQMVAGEISLRDHLAAQVSMDIPDAGDRLIALHLIEML 175

Query: 175 SEAGYLEANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDP 234
            EAGYL  +L + A  LG P   V  VL+ +  FDP GV ARSL ECL LQ  E NR DP
Sbjct: 176 DEAGYLIGDLDELAERLGCPTERVLVVLKRVQGFDPVGVFARSLKECLGLQLAEKNRLDP 235

Query: 235 CIQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTPD 294
            +Q LL NL+LLA+  LP L + CGVD ED+A+MI E++  DPKP L F    A PVTPD
Sbjct: 236 AMQALLDNLELLARRDLPGLMKACGVDAEDMAEMIGEIKALDPKPALAFDHIVAQPVTPD 295

Query: 295 LFVSRTREG-WGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKAL 353
           + + RT++G W +E+NS TLPRVLVN  YY ++AG  + K  K ++++   SANWLVK+L
Sbjct: 296 VLMRRTQDGAWVVELNSDTLPRVLVNTRYYSKIAGAARSKDDKTYISERFQSANWLVKSL 355

Query: 354 DQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCP 413
            QR  TI+KVA+EIVRQQ+ FFR GV +L+PL LR +A AI MHESTVSRVTSNKY++ P
Sbjct: 356 HQRATTILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYMATP 415

Query: 414 RGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGMD 473
           RG+YELKYFFT  + +ADG  A SAE+V+  IKALI A E  ++LSDD++VD L+A+G+D
Sbjct: 416 RGIYELKYFFTQAIGSADGGDAHSAESVRHRIKALIDA-EGKSVLSDDSIVDALKAEGID 474

Query: 474 IARRTVAKYRESMGIGSSVQRRRQKAL 500
           IARRTVAKYRE+M IGSSVQRRR+K+L
Sbjct: 475 IARRTVAKYREAMNIGSSVQRRREKSL 501