Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 477 a.a., RNA polymerase factor sigma-54 from Dickeya dadantii 3937

 Score =  269 bits (687), Expect = 2e-76
 Identities = 183/505 (36%), Positives = 268/505 (53%), Gaps = 49/505 (9%)

Query: 7   LDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVDR 66
           L +R SQ L MTPQLQQAI+LL LS LE++  +   LE NPLLEQ    D          
Sbjct: 5   LQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQADIHD---------- 54

Query: 67  EVEAPTLAAETGASDDL-IAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSGSLDML 125
           EVE      E+  S+ L   + L   D P           D+ P D           ++ 
Sbjct: 55  EVETQ----ESSDSETLDTREALEQKDMP-----------DELPLDAAWD-------EIY 92

Query: 126 GGGSGSGEAVDFDSF------ANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQISEAG 178
             G+ SG + D+              +LQ++LM Q   T  S  D  IAT ++  +   G
Sbjct: 93  TAGTPSGTSTDYRDEELPVYQGETTQTLQDYLMWQVELTPFSDTDSAIATSIVDAVDNTG 152

Query: 179 YLEANLLQTAHGLG---VPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPC 235
           YL  +L      +G   V L  VEAVL+ +  FDP GV AR L ECL +Q  + +   P 
Sbjct: 153 YLTVSLDDIRDSIGNDDVTLEEVEAVLKRVQRFDPVGVAARDLRECLLVQLSQFDNGIPR 212

Query: 236 IQ--RLLAN--LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPV 291
           +   RL+ +  LDLLA      L R   + EE L + +  ++  DP+PG    +  +  V
Sbjct: 213 LAEARLIVSEYLDLLANHDFRTLIRTSRLKEEVLKEALALIQSLDPRPGQSINTGESEYV 272

Query: 292 TPDLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVK 351
            PD+ V + +  W +E+N+ ++PR+ +N+ Y   L    ++ +   ++   L  A WL+K
Sbjct: 273 IPDVLVRKIQGHWAVELNTDSVPRLQINQQY-AALGSSARNDSDGQFIRSHLQEARWLIK 331

Query: 352 ALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLS 411
           +L+ R  T++KV   IV QQ+ FF +G  ++KP+ L  +A A++MHEST+SRVT+ K+L 
Sbjct: 332 SLESRNDTLLKVTRCIVEQQQAFFEHGEEFMKPMVLADIAQAVDMHESTISRVTTQKFLH 391

Query: 412 CPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKG 471
            PRG++ELKYFF+S V   D  G  S+ A+++ ++ LI AE     LSD  L  LL  +G
Sbjct: 392 SPRGIFELKYFFSSHV-NTDNGGEASSTAIRALVRKLIAAENPAKPLSDSKLTSLLSEQG 450

Query: 472 MDIARRTVAKYRESMGIGSSVQRRR 496
           + +ARRTVAKYRES+ I  S QR++
Sbjct: 451 IIVARRTVAKYRESLSIPPSNQRKQ 475