Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 483 a.a., RNA polymerase sigma-54 factor from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  207 bits (528), Expect = 5e-58
 Identities = 165/504 (32%), Positives = 247/504 (49%), Gaps = 53/504 (10%)

Query: 6   RLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVD 65
           +L++ Q  S  ++PQ  Q IKLL +   E+EA V  ELE NP LE+G       EG    
Sbjct: 3   KLNLNQVLSQKLSPQQIQFIKLLQVPTAELEARVEEELEINPALEEGK-----EEGDDAQ 57

Query: 66  REVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSGSLDML 125
            EV A     + G  +D               D   E ++ D            G   M 
Sbjct: 58  EEVLADNY--DEGNKEDK--------------DINLEDYLSDD----------YGGYKMQ 91

Query: 126 GGGSGSGEAVDFDSFANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQISEAGYLEANL 184
           G G+ + +  D +   ++  SL E L+ Q     L     LI  QLIG I   GY+  +L
Sbjct: 92  GDGNYTPDEEDREMPLSSGTSLHEQLLSQLSFLRLDEHQKLIGKQLIGSIESDGYIRRDL 151

Query: 185 ------LQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQA-KEANRYDPCIQ 237
                 L  +  +   L  VE VL  I +FDP G+ ARSL ECL +Q  ++ ++ D  +Q
Sbjct: 152 EAIINDLAFSQNVETDLDEVEEVLRKIQNFDPAGIAARSLQECLIIQLERKEHQEDEVVQ 211

Query: 238 RLLANL----DLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATP-VT 292
           + +  +    D   K    ++ + C + EEDL ++I+ +   +PKPG        T  + 
Sbjct: 212 KAIKVVTDCFDEFTKKHYDKILKKCNLSEEDLKEVIQMITRLNPKPGGGSDGLMRTQYII 271

Query: 293 PDLFVSRTREGWGIEVNSATLPRVLVNRTYYVEL-AGGPQDKASK------AWLADCLAS 345
           PD  ++       I +NS   P + V+R+Y     A    DK  K      +++   L +
Sbjct: 272 PDFLLNVVNGKPEITLNSRNAPELRVSRSYSEMFEAYEKSDKKDKKLKDTVSFVKQKLDA 331

Query: 346 ANWLVKALDQRQKTIIKVASEIVRQQEDFFRNG-VAYLKPLTLRAVADAIEMHESTVSRV 404
           A W + A+ QRQ+T++K    I+  Q++FF  G    LKP+ L+ +A+ I+M  STVSRV
Sbjct: 332 AKWFIDAIKQRQQTLLKTMHAILDYQKEFFEEGDETKLKPMILKDIAERIDMDISTVSRV 391

Query: 405 TSNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLV 464
            ++K +    G++ LKYFF+ G++   G+  VS   VKS ++ L+  E+    LSDD LV
Sbjct: 392 ANSKAIQTEFGVFPLKYFFSEGISTEGGED-VSNREVKSVLQKLVDNEDKRKPLSDDKLV 450

Query: 465 DLLRAKGMDIARRTVAKYRESMGI 488
            LL  KG +IARRTVAKYRE + I
Sbjct: 451 KLLNEKGYNIARRTVAKYREQLQI 474