Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 499 a.a., RNA polymerase factor sigma-54 from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  418 bits (1075), Expect = e-121
 Identities = 249/503 (49%), Positives = 319/503 (63%), Gaps = 19/503 (3%)

Query: 3   LGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGS 62
           +G RL++RQ Q LV+TPQLQQAIKLL LSNLE+E FV  ELE+NPLL++   +  G    
Sbjct: 2   IGQRLEVRQGQGLVITPQLQQAIKLLQLSNLELEDFVEAELERNPLLQREEPE--GETPE 59

Query: 63  GVDREVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGAGSGSGSL 122
            V+R VE  T   E    D +  + + G D+  D  +G +    +  +DRM   +  G  
Sbjct: 60  PVER-VET-TADGEMSFGDGVGHEAVSGMDAGSDDVYG-DAAPGERTSDRMTDEAQPGLS 116

Query: 123 DMLGGGSGS------GEAVDFDSFANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQIS 175
           D    G G       GE  D         +L EHL  QA S  LS  D  IA  LI    
Sbjct: 117 DWSSAGKGGQMFEGEGERPDAHEL-----TLWEHLQAQASSAGLSPADHGIALTLIDATD 171

Query: 176 EAGYLEANLLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPC 235
           E GYL   L + A  LGVPL  +EAVL V H F+PTG+ ARS+ ECL LQ  E NR+DP 
Sbjct: 172 EGGYLRGELTEFADRLGVPLERIEAVLSVCHGFEPTGIMARSVPECLKLQLIERNRFDPA 231

Query: 236 IQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTPDL 295
           +  LL NLDLLAK  L  LRR+C VD EDL DMI ELR   P+PG  F  + A  V PD+
Sbjct: 232 MAALLDNLDLLAKRDLAGLRRVCEVDGEDLTDMIAELRALTPRPGAGFGGEPAQTVVPDV 291

Query: 296 FVSRTREG-WGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKALD 354
            V     G W +E+N+ TLPR+LV++ Y+  +  G +    K ++ADC A ANWLVK+LD
Sbjct: 292 HVRPDPAGGWRVELNADTLPRLLVDKRYHGLVQAGARSDTEKTFVADCAAQANWLVKSLD 351

Query: 355 QRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSCPR 414
           QR KTI+KV+SEIVRQQ+ F   GV +L+PL L+ VADAI MHESTVSRVTSNKY++ PR
Sbjct: 352 QRAKTILKVSSEIVRQQDAFLAFGVEFLRPLNLKTVADAIGMHESTVSRVTSNKYIATPR 411

Query: 415 GLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHA-ILSDDTLVDLLRAKGMD 473
           G++ELK+FFT+ + + DG    SAEAV+  IK++I +E     +LSDD +V++L+  G+D
Sbjct: 412 GVFELKFFFTAAIQSVDGASTHSAEAVRHKIKSMIDSEGVEGDVLSDDRIVEILKETGID 471

Query: 474 IARRTVAKYRESMGIGSSVQRRR 496
           IARRTVAKYRE++ I SSV+RRR
Sbjct: 472 IARRTVAKYREALRIPSSVERRR 494