Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 477 a.a., RNA polymerase, sigma 54 (sigma N) factor from Escherichia coli BL21

 Score =  279 bits (713), Expect = 2e-79
 Identities = 185/504 (36%), Positives = 274/504 (54%), Gaps = 47/504 (9%)

Query: 7   LDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVDR 66
           L +R SQ L MTPQLQQAI+LL LS LE++  +   LE NPLLEQ            +D 
Sbjct: 5   LQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQ------------IDT 52

Query: 67  EVEAPTLAAETGASDDL-IAQGLGGADSP--LDVDHGAETFIDDGPADRMGAGSGSGSLD 123
             E  T   ET  S+ L  A  L   + P  L +D   +T           AG+ SG+  
Sbjct: 53  HEEIDT--RETQDSETLDTADALEQKEMPEELPLDASWDTIYT--------AGTPSGT-- 100

Query: 124 MLGGGSGSGEAVDFDS---FANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQISEAGY 179
                  SG+ +D +          +LQ++LM Q   T  S  D  IAT ++  + + GY
Sbjct: 101 -------SGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGY 153

Query: 180 LEANLLQTAHGLG---VPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYDPCI 236
           L   L      +G   + +  VEAVL+ I  FDP GV A+ L +CL +Q  + ++  P +
Sbjct: 154 LTVPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWL 213

Query: 237 Q--RLLAN--LDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVT 292
           +  RL+ +  LDLLA      L R+  + E+ L + +  ++  DP+PG    +     V 
Sbjct: 214 EEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVI 273

Query: 293 PDLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLVKA 352
           PD+ V +    W +E+NS ++PR+ +N+ +Y  +    ++     ++   L  A WL+K+
Sbjct: 274 PDVLVRKHNGHWTVELNSDSIPRLQINQ-HYASMCNNARNDGDSQFIRSNLQDAKWLIKS 332

Query: 353 LDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYLSC 412
           L+ R  T+++V+  IV QQ+ FF  G  Y+KP+ L  +A A+EMHEST+SRVT+ KYL  
Sbjct: 333 LESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS 392

Query: 413 PRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAKGM 472
           PRG++ELKYFF+S V   +G G  S+ A+++ +K LI AE     LSD  L  LL  +G+
Sbjct: 393 PRGIFELKYFFSSHV-NTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGI 451

Query: 473 DIARRTVAKYRESMGIGSSVQRRR 496
            +ARRTVAKYRES+ I  S QR++
Sbjct: 452 MVARRTVAKYRESLSIPPSNQRKQ 475