Pairwise Alignments

Query, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

Subject, 481 a.a., RNA polymerase sigma-54 factor from Acinetobacter radioresistens SK82

 Score =  263 bits (673), Expect = 8e-75
 Identities = 184/505 (36%), Positives = 268/505 (53%), Gaps = 51/505 (10%)

Query: 9   IRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVDREV 68
           ++ + SL +TPQLQQAI+LL LS+LE+E  +  +LE NPLLEQ            +D E 
Sbjct: 7   LKVANSLSLTPQLQQAIRLLQLSSLELEQEIQLQLESNPLLEQ------------IDDEN 54

Query: 69  EAPTLAAETGASDDLIAQGLGGADSP--LDVD-HGAETFIDDGPADRMGAGSGSGSLDML 125
              TL+         + Q L     P  L VD H  E +I    A  +            
Sbjct: 55  SISTLSNSNNTDIHELDQSLNADHLPEELPVDTHWDEVYIHQSTALEIP----------- 103

Query: 126 GGGSGSGEAVDFDSFANAAPSLQEHLMDQARST-LSGMDLLIATQLIGQISEAGYLEAN- 183
                  E  + +   + + SL++HL++Q      S +D LIA  L+  + + G+LEA  
Sbjct: 104 -------EFQEQEDNNHKSLSLKQHLLEQINLLHFSQIDQLIAYCLVDSLDQRGFLEAEI 156

Query: 184 ----------LLQTAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYD 233
                     L +  H   V    V  VL+ I   DP G G+R+LAECL +Q  EA    
Sbjct: 157 EEITASVQNLLAEMGHEEEVEDDEVYVVLKHIQRLDPLGAGSRNLAECLRIQL-EALSSV 215

Query: 234 PCIQR---LLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATP 290
           P IQ    LL +  LL    L +L +  G++ E L   I  L+     PG+ F  +S+  
Sbjct: 216 PVIQDALILLEHYHLLIANDLGKLLKQTGLNTERLKSAINMLKTLKAYPGIEFEDESSNY 275

Query: 291 VTPDLFVSRTREGWGIEVNSATLPRVLVNRTYYVELAGGPQDKASKAWLADCLASANWLV 350
             PD+ VS+  + W +++N+  LP++ +N ++Y  +           +L D L  A   +
Sbjct: 276 QIPDVIVSKKDQIWHVQLNTDILPKLRIN-SFYAGMIRRADQSTDNNYLKDQLYEAKNFI 334

Query: 351 KALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTSNKYL 410
           K++D+R KT++KVAS IV  Q  FF  G   +KPL LR VA+ +++HESTVSRVTSNKY+
Sbjct: 335 KSIDERHKTLLKVASCIVEHQRTFFEIGAEGMKPLILREVAEEVQLHESTVSRVTSNKYM 394

Query: 411 SCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDLLRAK 470
             PRGL+ELKYFF+S V    G G  S+ A+++ IK L+  E     LSD+++ +LL+ +
Sbjct: 395 LTPRGLFELKYFFSSHVGTTSG-GEASSTAIRAMIKKLVSNENPRKPLSDNSITNLLKEE 453

Query: 471 GMDIARRTVAKYRESMGIGSSVQRR 495
           G+D+ARRTVAKYRES+ I SS  R+
Sbjct: 454 GIDVARRTVAKYRESLNIPSSSDRK 478