Pairwise Alignments

Query, 727 a.a., Excinuclease ABC subunit B from Sphingobium sp. HT1-2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 43/299 (14%)

Query: 72  GSGKTFTMAKTIEALQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFVSY----YDYYQ 127
           G+  +  +A+   +  R  L+L  +   A +L  E + F PD  V  F  +    YD + 
Sbjct: 23  GAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDLFS 82

Query: 128 PEAYVARSDTYIEKESSVNESIDRMRHSATRALLERDDVIIVASVSCLYGIGSVETYSAM 187
           P       D   ++ +S+   +  + H           +++V   + L+ +         
Sbjct: 83  PH-----QDIISQRIASLYR-LPELSHG----------ILVVPITTALHRLAPTRFLLGS 126

Query: 188 TFSMKKGGIEDQREIIRKLVALQYKRNDAGFARGNFRVKGDNLEIFPSHYEDTAWRISFF 247
           +  +  G   D  ++  +L A  Y+  D  +  G F V+G  +++FP   +   +RI  F
Sbjct: 127 SLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSK-LPYRIDLF 185

Query: 248 GDEIEEIVEFDPLSGRKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELTERLKELEAE 307
            +EIE +  FDP + R +  +D V++ P        P  K+ +   +    ER       
Sbjct: 186 DNEIETLRTFDPETQRSIDKVDSVRLLPAREF----PMQKEEVTRFKARFRERFD----- 236

Query: 308 GKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLPENAVLF 366
                   ++ R +   + +A+    AGIE Y          E   TLF+YLP +  +F
Sbjct: 237 --------VDFRRSAIFQDLASGIIPAGIEYYLPLFF-----EETSTLFDYLPTDTQVF 282



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 33/130 (25%)

Query: 500 GIKVRYMHSDVETLERI-----ELIRDLRLGV---------------------YDVLIGI 533
           G +V Y+H+DV+T+E+      EL+ + R+G+                     ++VL+  
Sbjct: 811 GGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVAS 870

Query: 534 NLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRVTGSMER 593
            ++  G+D+P    + I  ADK G       L Q  GR  R+       YA  +T + ++
Sbjct: 871 TIIETGIDVPSANTIVIERADKFGL----AQLHQLRGRVGRS---HHQAYAYLLTPTRQK 923

Query: 594 ALNETSRRRE 603
              +  +R E
Sbjct: 924 VSADAEKRLE 933



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 41  YEPSGDQPTAIAELVAAAKQGEK--DQVLLGVTGSGKT-FTMAKTIEALQ--RPALILAP 95
           +E + DQ  AI E V A     K  D+++ G  G GKT   M     A+   R   +L P
Sbjct: 601 FEETPDQQAAI-EAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVP 659

Query: 96  NKILAAQLYGEFKSFFPD 113
             +LA Q Y  F+  F D
Sbjct: 660 TTLLAQQHYNSFRDRFAD 677