Pairwise Alignments

Query, 908 a.a., Ribonuclease E (EC 3.1.26.12) from Sphingobium sp. HT1-2

Subject, 1091 a.a., ribonuclease E from Pseudomonas putida KT2440

 Score =  416 bits (1070), Expect = e-120
 Identities = 287/758 (37%), Positives = 392/758 (51%), Gaps = 53/758 (6%)

Query: 174 RYKIQDVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNA 233
           R  I++V+   Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN    GGISR+I   
Sbjct: 85  RVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGE 144

Query: 234 ADRKRLKSIIAEMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLRAAAPE 293
            +R  L+  +  + +P  MG IVRTAGL R+  E++ D DYL +LW  I+E +L  AAP 
Sbjct: 145 -ERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRAAPF 203

Query: 294 LIHNDSDLIKRAIRDIYNKDIEEVIVEGEHGYKAAKDFMKLLMPSHARRVKQYADAVSLF 353
           LI+ +S++I RAIRD   +DI EV+++     + A  F++ +MP +A +VK Y D+V LF
Sbjct: 204 LIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLF 263

Query: 354 QRASVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEA 413
            R  +E Q+   +  VV L SGG +VI+PTEALVSIDINS R+T+   IE+TA+ TNLEA
Sbjct: 264 NRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEA 323

Query: 414 AREIARQLRLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLME 473
           A EIARQLRLRD+ GL+VIDFIDM    N R VE+ ++E L+ DRAR+QVGRIS FGL+E
Sbjct: 324 AEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLE 383

Query: 474 MSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSVITLRASQE 533
           MSRQRLR  + E+S   CP C GTG++R   S  L  LR++EEEA + R + +  +    
Sbjct: 384 MSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIP 443

Query: 534 AAFYVLNNKRRELDEIEQRYGVRIVVLPDGEIEGARMSVEPSGPRPERVVTYAPLAEEED 593
            A ++LN KR  + +IE R   RI++LP+  +E     V+                  +D
Sbjct: 444 VAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ---------------RLRDD 488

Query: 594 DLDVIEDEEEEEEIEEEAAPERQERGERGDRGEER--EGGRRRRRRRRRRGGQRDDAPGE 651
           + +V+ ++   E    EA    Q    R    +E   +    R         +   A   
Sbjct: 489 NPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAP 548

Query: 652 TGEDNGAED----------------GEEGEESAEIETDAEAVAAEPAAEGEDEGGSRRRG 695
                 A +                G++   +A +   AE  AAE +   E+    R++ 
Sbjct: 549 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQS 608

Query: 696 RRGRRGGRR--RREGGEAGAEAGETAGDDSAETVIEAEAAAPVEE-APVAEAAPEEAPAE 752
           R   R GRR   R+  E  AE          E     E  AP EE AP  E AP E  A 
Sbjct: 609 R--NRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAPREERAP 666

Query: 753 EAPKTRRR-----PRARKAKDA--AAEPAAVEVTEALAEVVA---EAPAAEPVVEEAAEK 802
             P+  RR      R R+ ++   A  PA  E  +   E VA    AP  E    E    
Sbjct: 667 RQPREDRRGNRGEERVRELREPLDATPPAEREERQPREERVAREERAPREERAPREERAP 726

Query: 803 PKPKRTRKKKADVEAEAAAAAEAPAVE-VVAEEAAEKPKPKRTRKKKVEPVAEEVAVEAA 861
            + +  R+++A  E  A     AP  E    EE A + +     ++   P  EE    AA
Sbjct: 727 REERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAA 786

Query: 862 PAVTEVAAAPAEAAPASEAVTADPAAEVESDENGEPRR 899
              TE AA  AE     E +  D   E E  +   PRR
Sbjct: 787 EEATEQAAELAEEQLPGEELLQD---EQEGTDGERPRR 821



 Score = 90.5 bits (223), Expect = 5e-22
 Identities = 44/83 (53%), Positives = 56/83 (67%)

Query: 4  RMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGG 63
          RMLI+A   EE RVA+V G R+ + D ES   +Q K NIY  K+TR+EPSL+AAFVD+G 
Sbjct: 3  RMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGS 62

Query: 64 NRHGFLAFSEIHPDYYQIPREDR 86
           RHGFL   EI  +Y++   E R
Sbjct: 63 ERHGFLPLKEISREYFKKAPEGR 85