Pairwise Alignments

Query, 168 a.a., sigma factor from Sphingobium sp. HT1-2

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 5/153 (3%)

Query: 12  RALIDYAERIVGSRAEAEDVVQDAWLHLRQALGRGVLRDPVPYLYRIVRNLAIDVQRR-A 70
           R L+ +    +G+R  AEDVV DA++ + +      +  P  +LYR   NL ID  RR A
Sbjct: 7   RELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDGHRRNA 66

Query: 71  RRQSRHLAEGGDAHLAEVPDDTPSPEAVVAAQAELHCVEQALASLPERQRIAIEMYRLGG 130
            RQ   L    D   AE    + SP         L  +E+ALA LP   R +  + +L G
Sbjct: 67  LRQVEPL----DVLDAEERFASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKLEG 122

Query: 131 FKLREIADRLSISVSLTHLLIAQGLAECHRQCR 163
               +IA+RLSIS ++    I   +  C  + R
Sbjct: 123 LTHLQIAERLSISRAMVEKHIVNAMKHCRVRMR 155