Pairwise Alignments

Query, 168 a.a., sigma factor from Sphingobium sp. HT1-2

Subject, 211 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 72.8 bits (177), Expect = 3e-18
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 28  AEDVVQDAWLHLRQALGRGVLRDPVPYLYRIVRNLAIDVQRRARRQSRHLAEGGDAHLAE 87
           A + + DAWL L +     V ++P  Y+YR+  N+A+D  R  R    H  E  D+ LA+
Sbjct: 56  ASECLHDAWLRLGETSVAAV-QNPEAYVYRVACNVAMDRMRSNR--PWHCVEDADSELAQ 112

Query: 88  VPDDTPSPEAVVAAQAELHCVEQALASLPERQRIAIEMYRLGGFKLREIADRLSISVSLT 147
             D  P P+ +  A++EL  VE+A+A LP R R  +   R+      E+A R  +S+   
Sbjct: 113 HADPAPGPDRIATARSELAAVERAMARLPGRHRAVMVALRIDEMTRDEVAARYRLSLRRV 172

Query: 148 HLLIAQGLAECHRQ 161
              + Q L  C  Q
Sbjct: 173 DTALRQALDYCAEQ 186