Pairwise Alignments

Query, 168 a.a., sigma factor from Sphingobium sp. HT1-2

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 92.8 bits (229), Expect = 3e-24
 Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 4   LDIYAAHRRALIDYAERIVGSRAEAEDVVQDAWLHLRQALG-RGVLRDPVPYLYRIVRNL 62
           L  +  +R  L+  A RI G R+ AEDVVQDA+  L  A       +  + YL++IVRNL
Sbjct: 15  LQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNL 74

Query: 63  AIDVQRRARRQSRHLAEGGDAHLAEVPDDTPSPEAVVAAQAELHCVEQALASLPERQRIA 122
           AID  R+   + ++   G +     V     SPEA    +A L+ + +AL  LP R R A
Sbjct: 75  AIDHYRKQAMELKY--SGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYA 132

Query: 123 IEMYRLGGFKLREIADRLSISVSLTHLLIAQGLAECHR 160
            EMYRL G   ++IA  L +S +L + +I   L  C +
Sbjct: 133 FEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 170