Pairwise Alignments

Query, 168 a.a., sigma factor from Sphingobium sp. HT1-2

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 5e-15
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 12  RALIDYAERIVGSRAEAEDVVQDAWLHLRQALGRGVLRDPVPYLYRIVRNLAIDVQRRAR 71
           R L+ +    +GSR  AEDV  DA+L + +  G   +  P  +LYR   NL +D   R R
Sbjct: 6   RELVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVD---RHR 62

Query: 72  RQSRHLAEGGDAHLAEVPDDTPSPEAVVAAQAELHCVEQALASLPERQRIAIEMYRLGGF 131
           RQ    AE  DA  A+    +   +  +     L  +++AL  L    R +  + ++ G 
Sbjct: 63  RQLVRQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGL 122

Query: 132 KLREIADRLSISVSLTHLLIAQGLAECHRQCR 163
             ++IA+RL IS SL    I   +  C  + R
Sbjct: 123 SHQQIAERLGISRSLVEKHIVNAMKHCRVRMR 154