Pairwise Alignments

Query, 168 a.a., sigma factor from Sphingobium sp. HT1-2

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 70.1 bits (170), Expect = 2e-17
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 6   IYAAHRRALIDYAERIVGSRAEAEDVVQDAWLHLRQALGRGVLRDPVPYLYRIVRNLAID 65
           ++   R  L+   +R+VG+ + AED++Q+ +L + +ALG   +    P++++  RNLA+D
Sbjct: 9   VFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALD 68

Query: 66  VQRRARRQSRHLAEG-GDAHLAEVPDDTPSPEAVVAAQAELHCVEQALASLPERQRIAIE 124
             R  R Q+R L +   D  L  V     S E    A+  L  +  +L  L ERQ+    
Sbjct: 69  HLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFI 128

Query: 125 MYRLGGFKLREIADRLSISVSLTH------LLIAQGLAE 157
           + RL G    EIA++LS+S S         + I  G+AE
Sbjct: 129 LSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAE 167