Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 181 a.a., ECF RNA polymerase sigma factor SigF from Xanthobacter sp. DMC5

 Score =  110 bits (275), Expect = 1e-29
 Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 11  LMIDGLGGDAAAHAALLRLLVPLLRGFYRRRV--RGADD-DIEDMVQDTLIAVHTRRATY 67
           LM   L GD AA+  LLR L P LR   +RR+   GA   + ED+VQ+TL+AVH +R T+
Sbjct: 11  LMRSALAGDGAAYEQLLRDLAPALRTVVQRRLVRLGAPTAETEDVVQETLLAVHLKRHTW 70

Query: 68  DPERAFTAWLYAVARYKMIDHFRRVGRL--RPIDDLADSLVADEFEASSIARLDINDLLE 125
             E     WL+ +AR KM+DH RR GR    P++D A+ L A E E      +++   L 
Sbjct: 71  RTEDPLGPWLWTIARNKMVDHLRRRGRRVEVPVEDFAEFLPAPE-ERPDTGAMEVEQHLA 129

Query: 126 QLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARV 174
            LP KQ  ++R++ +EG SVAE A    +    V+V++HR   +L AR+
Sbjct: 130 LLPQKQQAVLRSVAVEGASVAETAERMRMTPGAVRVALHRAFASLSARL 178