Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 50  EDMVQDTLIAVHTRRATYDPER-AFTAWLYAVARYKMIDHFRRVGRLRPIDDLADSLVA- 107
           ED+V D  I +     ++DP R +   W+++V R+  ++  R   R  P+ D  + + A 
Sbjct: 45  EDIVHDAFIKIWRGAGSFDPSRGSARGWVFSVTRHLALNFVRNQYREVPLSDEHEQVAAT 104

Query: 108 DEFEASSIARLDINDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGL 167
           D FE ++ +   ++  LEQL P +   I    ++G S +E A         VK  + R L
Sbjct: 105 DTFEFTARSG-QVHTCLEQLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSL 163

Query: 168 KAL 170
            AL
Sbjct: 164 AAL 166