Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  141 bits (356), Expect = 6e-39
 Identities = 79/172 (45%), Positives = 110/172 (63%), Gaps = 3/172 (1%)

Query: 5   EGHLRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRR 64
           E  LR+L + GL GDA A+   L+ L   LR F  +R+ G  D++ED+VQ+ L+A+H +R
Sbjct: 16  EAALRSLFLRGLDGDARAYRDFLQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQR 75

Query: 65  ATYDPERAFTAWLYAVARYKMIDHFRRVGRLRPIDDLAD---SLVADEFEASSIARLDIN 121
            TY  ++  TAW++A+ARYKMID  R       + D  D   ++ A+  E +S AR D+ 
Sbjct: 76  HTYQSDQPLTAWVHAIARYKMIDLLRAKSVREDLHDPLDDDLAVFAESAEEASDARRDLG 135

Query: 122 DLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMAR 173
            LL+ LP +Q   I  +++EGLSVAEAAS  G+ ES VKV +HRGLKAL AR
Sbjct: 136 GLLQTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVKVGIHRGLKALAAR 187