Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 5/157 (3%)

Query: 24  AALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARY 83
           A LL   +P LR  Y R + G     +D+VQDTL    ++   +       AWL+ V   
Sbjct: 3   ARLLVEHIPSLRR-YARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHN 61

Query: 84  KMIDHFRRVG---RLRPIDDLADSLVAD-EFEASSIARLDINDLLEQLPPKQARMIRAIR 139
                 RR      + P+DDL   L    +        LD+   L QLP +Q  ++  + 
Sbjct: 62  IFASQVRRTPPPHAVVPLDDLPHELHGGIDSGRGQDTSLDLQRCLMQLPEEQRAVLLLVT 121

Query: 140 LEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
           LE LS AE A   GI    V   + R    L   + G
Sbjct: 122 LEDLSYAEVAKVLGIPAGTVMSRLSRARVRLQELMDG 158