Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 199 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 64.7 bits (156), Expect = 1e-15
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 38  YRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARYKMIDHFRR--VGRL 95
           Y R +    D  +D+VQ+TL+     RA+++P     AW + + R   +   RR   G  
Sbjct: 7   YARSLARNSDTAQDLVQETLLKAWRHRASFEPGTNLKAWTFRILRNSFLSQVRRRGAGYA 66

Query: 96  RPIDDLADSLVADEFEASSIARLDINDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIG 155
               +L D  VA   E S +   D+  L  +L P+Q R I+ I ++GLS  E A+ E + 
Sbjct: 67  SETAELIDIPVASNQE-SVVTLSDVRRLWSRLTPEQQRCIQLIGIQGLSYEETATIEQVP 125

Query: 156 ESDVKVSVHRGLKAL 170
              +K  V RG + L
Sbjct: 126 VGTIKSRVLRGRQLL 140