Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 58.9 bits (141), Expect = 6e-14
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 19  DAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLY 78
           DA   AAL  +L P LR F  R + G  D  +D+VQ+T++     R  Y     F AW +
Sbjct: 16  DAEFKAALAAVL-PQLRAF-ARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAF 73

Query: 79  AVARYKMIDHFRRVGRLRPIDDLADS--LVADEFEASSIARLDINDLLEQLPPKQARMIR 136
            + R   +   RR   +   D+L     L A   +  S+   D+   L QLP  Q   + 
Sbjct: 74  VILRNHFLSEMRRRRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALI 133

Query: 137 AIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
            +   G+S  E A   G+    +K  V R   AL A ++G
Sbjct: 134 LVGAGGISYEETAEIIGVAVGTIKSRVARARVALEALLNG 173