Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 56.2 bits (134), Expect = 4e-13
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 3/158 (1%)

Query: 21  AAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAV 80
           A   A L  ++P LR F  R + G  D  +D+VQ+T++     R  Y     F AW + +
Sbjct: 17  AEFKAQLAAVLPQLRAF-ARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAFVI 75

Query: 81  ARYKMIDHFRRVGRLRPIDDLADS--LVADEFEASSIARLDINDLLEQLPPKQARMIRAI 138
            R   +   RR   +   D+L     L A   +  S+   D+   L QLP  Q   +  +
Sbjct: 76  LRNHFLSEMRRKRFVGEWDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILV 135

Query: 139 RLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHG 176
              G+S  E A   G+    +K  V R   AL   + G
Sbjct: 136 GAGGISYEETAEIVGVAVGTIKSRVARARVALEQLLDG 173