Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 191 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

 Score = 57.4 bits (137), Expect = 1e-13
 Identities = 56/173 (32%), Positives = 78/173 (45%), Gaps = 17/173 (9%)

Query: 11  LMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIE---DMVQDTLIAVHTRRATY 67
           L    L G  AA+ AL+R      R    R  RG  DD +   D+VQ++ +A     A Y
Sbjct: 11  LAAQALAGRQAAYGALMRRH----RDAVYRLARGHVDDADAAMDIVQESFVAAFASLARY 66

Query: 68  DPERAFTAWLYAVARYKMIDHFRR--VGRL----RPIDD---LADSLVADEFEASSIARL 118
           D  R F  W+  +   K  D  RR  V R     RPI+D   +AD+    E EA S A +
Sbjct: 67  DGRRPFRGWIARITINKCHDWARRRAVRRFFSFARPIEDAAHVADAAPDPEQEAGSRAGI 126

Query: 119 -DINDLLEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKAL 170
             I   +  LP     +I    +EG+S AE A   G+ E  V+  ++R  + L
Sbjct: 127 ARIEAAVAALPVALREVILLRGIEGMSQAEVAQILGVTEKAVETRLYRARRQL 179