Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 182 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 6e-15
 Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 18/143 (12%)

Query: 40  RRVRGADDDIEDMVQDTLIAVHTRRATYDPER-AFTAWLYAVARYKMIDHFRRVGRLRPI 98
           RR+   D   ED+V D +I + TR A+YDP R +   W+Y++ R+  ++  R   R   +
Sbjct: 41  RRIARDDATAEDIVHDAIIRIWTRAASYDPARGSARGWIYSITRHLALNSIRDTRRETVL 100

Query: 99  DDLADSLVADEFEASSI-ARLDINDL----------LEQLPPKQARMIRAIRLEGLSVAE 147
            D      AD   AS++  R+D  DL          LEQL P   R I    ++G S AE
Sbjct: 101 TD------ADTETASTLHGRVDDLDLWSGSAKIYRCLEQLQPAPQRCILHAYVDGCSHAE 154

Query: 148 AASAEGIGESDVKVSVHRGLKAL 170
            A   G     VK  + R LKAL
Sbjct: 155 IAGLLGAPLGTVKAWIKRSLKAL 177