Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

 Score =  136 bits (343), Expect = 2e-37
 Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 5/174 (2%)

Query: 8   LRALMIDGLGGDAAAHAALLRLLVPLLRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATY 67
           ++AL++ GL GD  A+   L  L   +R F R R+     +IEDMVQD L+AVH  R TY
Sbjct: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTY 60

Query: 68  DPERAFTAWLYAVARYKMIDHFRRVGRLRP----IDDLADSLVADEFEASSIARLDINDL 123
            P++  TAW+ A+ARYK+ DH R V R       +DD A      E E++  +R D+  L
Sbjct: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASR-DLTKL 119

Query: 124 LEQLPPKQARMIRAIRLEGLSVAEAASAEGIGESDVKVSVHRGLKALMARVHGA 177
           L+QLP +Q   I  ++LEGLSV E A   G+  S VKV +HRGLKAL   + GA
Sbjct: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173