Pairwise Alignments

Query, 179 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 5e-12
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 34  LRGFYRRRVRGADDDIEDMVQDTLIAVHTRRATYDPERAFTAWLYAVARYKMIDHFRRVG 93
           LRG+ R RV G  +   D+ QDT + +  R     P +   A+L ++AR  MID FRR  
Sbjct: 23  LRGWLRSRV-GCSEHAADLAQDTFVRL-LRARQMSPLKEPRAYLSSIARGLMIDQFRRRA 80

Query: 94  RLRPIDD----LADSLVADEFEA----SSIARLDINDLLEQLPPKQARMIRAIRLEGLSV 145
             R   +    L ++ V  E +      S+ RLD    L+QL P+  +     +L+GLS+
Sbjct: 81  LERAYQEGLAHLPEAEVPSEEDKLVILDSLERLD--RALQQLKPRVRQAFLLAQLDGLSI 138

Query: 146 AEAASAEGIGESDVKVSVHRGLKA 169
            + A   G+  + V+  + + L A
Sbjct: 139 VQVAQRLGVSRATVERDLAKALGA 162